Takifugu flavidus (sansaifugu): 130539589
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Entry
130539589 CDS
T09160
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03013
Nucleocytoplasmic transport
tfs03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130539589
03015 mRNA surveillance pathway
130539589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfs03019
]
130539589
Enzymes [BR:
tfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130539589
5.6.2.5 RNA 5'-3' helicase
130539589
Messenger RNA biogenesis [BR:
tfs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130539589
mRNA cycle factors
Common to processing body (P body) and stress granule
130539589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130539589
NCBI-ProteinID:
XP_056914034
LinkDB
All DBs
Position
15:complement(1115120..1124937)
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AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDIEETELLGADTQGSEYDFTDFTLPSQTQTQGQSQLENQVNGPD
IVLQNGEDAVVKASQLLAELNFEEDEEDAYYTKDLPAHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPCASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIK
VPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIY
HKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS
ATIVYHLARQGSGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALH
NQTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGD
PRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQ
SLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQP
DKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSY
LVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVA
LTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNT
INPGGRFMSTAMYDAREALIPGSVYDRSNNGRTTNMYFQTHDQIGMIGTGPNPITAMNLP
IPFNLVMPPIPPPGYLGQINGPASGRGGGMKGKAATGAGGGSRGGRQRNRGNMGSGGNSG
SDRGLHGGHMGASQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYHGGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacggcccgagctcacaaactctaacgttcctcgacatcgaggaa
accgagcttttgggtgccgatacacagggctccgagtacgacttcaccgattttacccta
ccaagccagacccagactcaaggacagagtcagctagagaaccaggttaatggccccgac
atcgttttgcagaatggagaagacgccgtggttaaagccagccagctgttggcagaactg
aactttgaggaagatgaggaggacgcctattacaccaaggatcttcctgcgcatgcctgc
agctactgtggaattcatgatccagcttgtgtggtttactgtaacacaagcaagaaatgg
ttctgtaatggccgtggaaacacatctggcagccatattgtgaaccatctggtgagagcc
aagtcaaaagaggtaaccctgcataaggatggccctctgggagaaacagtgttggagtgc
tacaactgcggctgtcgtaatgtcttcctcctgggtttcattcccgccaaagctgactct
gtagtggtgctactgtgcagacagccctgtgctagccagagcagtttgaaggacatcaac
tgggacagctcacaatggcagcctctcatccaggaccgctgcttcctgtcctggctggtg
aaaatcccatcggagcaggagcagctgcgagctcgtcagatcaccgcccagcagatcaac
aagctggaggaactctggaaggaaaatccctgtgcatctttggaggacttggaaaaacct
ggagtggatgaggagccccagcatgtcctgctcagatatgaggatgcctaccagtaccag
aacatctttggtcctctagtgaagctggaggctgactatgataagaaactgaaggagtct
cagcagactcaggacaacataacagtcagatgggacttgggactgaacaaaaaaaggatt
gcttacttcactcttcctaaaactgactcggatatgaggctgatgcagggagatgaaatt
tgcctgagatacaaaggagacctggctcctccctggaaaggaattggacacgtcatcaaa
gtccctgataactatggtgatgagattgccatagaactaaggagcagtgcaggggctcca
gttgagatcccacacaactttcaggtggattttgtgtggaagtcgacttcttttgatagg
atgcaaagtgcccttaagacatttgctgtggatgagacttcagtgtctggttatatttac
cacaaactgttggggcacgaggttgaggacgtggttatcaagtgccagctgccgaaacgc
ttcacagcccagggcctgcccgacctcaaccactcacaggtgtatgctgtgaagacagtg
ctgcagcgtcccctcagcctgatccaaggtccacctgggacggggaagaccgtgacctct
gcgaccatcgtctatcacctggctcgacaaggcagcggtccagtgctagtgtgtgctccc
agtaacatcgccgttgatcaactgacagagaagatccaccagactggtctgaaggtggta
aggctgtgtgccaagagcagggaagccatcgactcccccgtgtcctttctggctttacac
aaccagacccgtaacatggagagtatgccagaactccagaagctccaacagctgaaagat
gagactggggaactttcgtcgtcggacgagaagcgatacagagctctgagacgcactgcc
gagagggaactgcttatgaatgcagatgtgatctgctgcacctgcgtcggggcgggagat
cctcgcctggccaagatgcagttccgatccatcctgatcgatgaaagcacccaggctaca
gaaccagagtgtatggtgcctgtcgttcttggtgccaaacagttaatcctggtgggagat
cactgtcagctggggcctgtggtgatgtgtaagaaggcagctaaagcaggcctgtcccag
tcgctttttgagcgcctggtagttctgggtatccggccaatccgtctgcaggtccagtac
cgtatgcacccggccctcagcgccttcccctccaacatcttctatgaggggtccttgcag
aacggagtcactgccgcggaccgtgtgaaaaaagggttcgatttccagtggccacagcct
gacaaaccaatgttcttttatgtgacccaaggccaagaagaaatcgccagctctggaaca
tcatatctcaacaggactgaggcagccaatgtggagaaaataaccacgaggctgctgaaa
gctggagcgaaacctgatcagatcggtatcattacaccctacgagggccagcggtcgtat
ctggtccagtacatgcagttcagtgggtcgcttcatacaaaactgtatcaggaagtggaa
attgccagcgtggatgcctttcagggcagagagaaggactttatcatcctgtcttgtgtg
agggccaacgagcatcagggcatcggtttcctgaacgatccccgacgtctcaatgttgcg
ctgactcgcgcaaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaagcag
cctctctggaatcaccttttgaactactacaaggagcagaaggtcctggtggaaggtcct
ctcaacaacctgcgggagagcctcatgcagttcagcaagccccgaaaactggtcaacacc
atcaatcctggagggcgattcatgagcacggccatgtatgatgccagagaagccctcatt
cctgggtctgtttatgaccggagcaacaacggacgtacaaccaatatgtatttccagacc
catgaccagatcggtatgattggaactggccctaatccaataacggcaatgaacctcccc
ataccctttaaccttgtgatgcccccgatccctccgcctggatacctggggcagatcaat
ggacccgcatcaggtcgcggtggaggtatgaaggggaaggccgccaccggagcaggcgga
gggtctcgcggcggccgccaaagaaaccgcggcaacatggggagtggaggaaattcagga
tcagaccgcggactgcacggaggtcacatgggtgccagccaggcaagccaggatctggga
tctcagcccttctcccagggtcccctgacgcaaggctacatcaacatgagccagccgtca
cagatgagccagccagggctctcgcagcctgaactctcacaggacagttaccttggagat
gagttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgg
gcttaccatggcggtgtgactggtctgtcccagtactag
DBGET
integrated database retrieval system
