KEGG   Takifugu flavidus (sansaifugu): 130539601
Entry
130539601         CDS       T09160                                 
Symbol
col1a1b
Name
(RefSeq) collagen, type I, alpha 1b
  KO
K06236  collagen type I alpha
Organism
tfs  Takifugu flavidus (sansaifugu)
Pathway
tfs04510  Focal adhesion
tfs04512  ECM-receptor interaction
tfs04518  Integrin signaling
tfs04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tfs00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130539601 (col1a1b)
   04518 Integrin signaling
    130539601 (col1a1b)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130539601 (col1a1b)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130539601 (col1a1b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:tfs00536]
    130539601 (col1a1b)
Glycosaminoglycan binding proteins [BR:tfs00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130539601 (col1a1b)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd TILa
Other DBs
NCBI-GeneID: 130539601
NCBI-ProteinID: XP_056914071
LinkDB
Position
1:27352414..27365223
AA seq 1448 aa
MFSFVDIRLALLLSAAVLLVRGQGEDDSTFGSCTLEGQLYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTSECADPIIPEGECCPICPDAEGTQGPVDEEPTMGEKGPTGPAGPPGRDG
LDGQPGPAGPPGPPGPPGLGGNFSPQMGYVDHTKSGGGPAVPGPMGPMGSRGSPGPPGSS
GPQGFTGPAGEPGEPGSPGPMGPRGPAGPPGKNGDDGEAGKSGRPGERGVAGTPGARGIP
GTAGLPGIKGHRGFSGLDGAKGDSGPAGPKGEPGINGENGIPGSMGARGLPGERGRPGAP
GPAGARGNDGNSGPSGPPGPTGPAGPPGFPGGAGAKGETGPQGGRGSDGPAGSRGEPGNP
GPAGAAGAAGVPGSDGSPGAKGAPGAAGIAGSPGFPGSRGPAGAQGAVGAPGPKGNNGDP
GPSGPKGEPGVKGEPGPVGVQGLAGPSGEEGKRGPRGEPGGGGPRGPPGERGAPGGRGFP
GGDGAAGGKGAPGERGSPGPAGPQGATGESGNPGAPGAPGSKGVTGSPGSAGPDGKAGPA
GVPGQDGRSGPPGPGGPRGQPGVMGFPGPKGTAGEPGKVGERGADGAAGAVGAPGKDGDA
GAPGPAGVAGPAGEKGEQGPAGPPGFQGLPGPQGATGETGKPGEQGVGGEVGPPGPSGPR
GDRGFPGERGAPGAAGPTGPRGSPGPSGNDGPKGEPGAAGAPGGVGGPGMQGMPGERGAA
GLPGAKGERGEAGAKGGDGAAGKDGSRGMTGPMGAPGPSGAQGEKGEPGPVGVAGPTGPR
GAPGDRGEAGPAGPAGFAGPPGADGQPGAKGESGETGPKGDAGPPGPTGPAGSSGPQGPS
GPSGPKGATGGAGAPGATGFPGPAGRVGPPGPAGVAGPPGPVGAVGKDGARGARGETGPA
GRPGEAGAVGAPGPSGEKGSPGADGAPGPAGISGPQGIGGQRGTVGIPGQRGERGFPGLA
GPAGEPGKQGSSGPVGERGPPGPAGPPGLSGAPGEPGREGSSGHDGAPGRDGASGPKGDR
GESGVAGPPGPPGAPGAPGAVGPSGKTGDRGEAGPAGPAGPSGPAGVRGPAGPAGAKGDR
GEAGEAGERGHKGHRGFSGMSGLPGPAGSHGERGPAGASGPAGPRGPAGSSGSPGKDGMN
GLPGPMGPPGPRGRNGEMGPAGAPGLPGPPGPPGAPGGGFDFISQPIQEKAPDPLRGGYY
RADDPNMMHDRDMEVDTTLKTLTQKVEKIRSPDGTQKSPARMCRDLRMCHPEWKSGMYWV
DPNQGSTLDAIKVHCNMETGETCIYPSDSSIPMKNWYLSKNMKEKKHVWFSESMTGGFQF
QYGMAGADSDDVNIQMTFMRLMSNQASQNITYHCKNSIAYMDSTTGNLKKALLLQGSNDV
EIRAEGNSRFTYSVSEDGCTSHTGSWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGV
EVGPVCFL
NT seq 4347 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcagcagtacttttggtc
agaggtcaaggcgaggatgatagcacattcggcagctgcacattagagggacagttgtac
aacgacaaggatgtatggaaacccgagccctgccagatctgcgtctgcgacagtggaacc
gtcatgtgcgacgaggtgatctgtgaggacacatctgagtgcgccgaccccatcatccca
gagggagagtgctgccctatctgtcctgatgctgagggtacccagggcccagtagatgag
gagccaacaatgggagagaagggccccactggtcccgctggtccccctggcagagatgga
cttgatggacagcctggacctgccggcccacctggaccccctggcccccctggccttggc
ggaaacttctctcctcaaatgggctatgtagaccacactaaatctggcggaggccctgcc
gttcccggcccaatgggtcccatgggttctcgtggttctcctggaccccctggatcttct
ggtcctcagggtttcactggacccgctggagagcctggtgagcccggatctcctggtccc
atgggtcctcgtggtcccgctggcccccctggaaagaacggagatgatggtgaggccggc
aagtctggtcgcccaggtgagcgtggagttgctggtaccccgggagctcgcggaatcccc
ggaaccgccggactgcccggcatcaagggacacagaggattcagcggtctggatggagct
aagggagacagcggaccagctggtcccaagggagagcctggtatcaacggggagaacggc
atccccggatctatgggtgctcgtggtcttcctggtgagagaggccgccctggagctcct
ggccccgctggcgcccgtggtaacgatggcaactccggcccctctggaccccctggacct
actggacctgctggcccccctggattccccggtggtgctggtgctaagggagagactggc
ccccagggaggccgtggtagtgatggacctgcaggatcccgcggtgagcctggtaaccca
ggacccgctggagctgctggagctgctggtgtccctggatctgatggctctcctggtgct
aagggagctcctggtgctgctggtattgctggttctcctggtttccctggtagccgtggt
cctgctggagctcagggtgccgtcggtgctcctggtcccaagggtaacaatggtgaccct
ggtccctccggtcccaagggagagcctggtgtcaagggagagcctggccctgttggagtt
cagggactcgctggaccttctggtgaggaaggaaagagaggaccccgtggagagcctggt
ggtggtggaccccgtggaccccctggagagcgtggtgcccctggtggtcgtggtttccct
ggtggtgatggagctgctggtggcaagggtgcccctggtgagcgtggttcccctggccca
gctggacctcagggagctaccggtgagtctggaaaccctggcgctcctggtgcacccgga
tccaagggtgtgactggtagccctggtagcgctggccccgacggaaaagctggacctgct
ggtgtccctggacaagatggacgctctggacctcctggacctggtggacccagaggacag
cctggagtcatgggattccctggacctaagggcactgctggtgagcccggtaaggttggt
gagagaggtgccgatggtgctgctggcgctgttggtgctcctggtaaggatggagatgct
ggtgctcccggacctgctggtgttgctggacccgcaggagagaagggagagcaaggacct
gctggacctcctggattccagggtctccctggaccccaaggtgctactggtgagactggc
aagcctggtgagcagggtgttggtggtgaggttggaccccctggaccatctggaccaaga
ggagacagaggtttccctggtgagcgtggtgctcctggtgctgctggcccaactggaccc
cgtggatctcctggcccctctggcaacgatggacccaagggagagcctggtgccgctggt
gcccccggtggtgtcggaggccctggaatgcagggtatgcctggtgagcgtggagcagct
ggtcttcccggtgcaaagggagagagaggagaggccggtgctaagggaggtgatggtgca
gctggtaaagacggcagccgtggtatgactggtcctatgggagcccctggaccctctggt
gctcagggtgagaagggtgagcctggccccgttggagttgctggacccactggtcctcgt
ggtgcccctggtgatcgtggagaggctggacctgctggacctgctggctttgctggacct
cctggtgctgatggtcagcctggtgccaagggagagagtggtgaaactggacccaaggga
gatgctggtccccctggacccactggacctgctggttcctctggtcctcagggcccctct
ggtccttctggacccaaaggtgctactggtggtgctggagctcctggtgctactggtttc
cctggacctgctggcagagttggacccccaggcccagctggagttgctggaccccctgga
cccgttggagccgtcggcaaagatggcgcaagaggagctcgtggtgagactggtcctgcc
ggtcgccccggtgaggctggtgccgttggtgcccccggaccttctggagagaagggatct
cctggtgctgatggtgcacctggccctgctggtatctctggaccccaaggtattggtgga
cagcgcggtaccgtcggtatcccaggtcagcgtggagagcgtggattccctggtctggct
ggaccagctggtgagcctggaaagcagggatcttctggacctgttggtgagcgtggaccc
cctggacctgctggaccccctggactgagcggtgcccccggagagcctggtcgtgaggga
tcaagtggtcacgatggtgcccctggccgcgatggagcttctggccccaagggagaccgt
ggtgagagtggtgttgctggacctcctggaccccctggtgctcctggagcccctggagct
gttggcccctctggaaagactggtgaccgtggagaggccggtcccgctggtcctgctggc
ccatctggtcctgctggtgtccgtggacctgctggtcctgctggagctaagggagacaga
ggagaggctggtgaggctggagagagaggacacaagggacacagaggattctctggcatg
agcggtctgcccggacctgctggttcccatggagagagaggacctgctggtgcctctgga
cctgctggacctagaggacctgctggatccagtggttctcctggtaaggatggcatgaac
ggtctgcctggacctatgggaccccctggacctcgtggtcgcaacggagagatgggccct
gctggtgcccctggacttcccggaccccctggaccccctggagctcccggtggtggattc
gacttcatcagccagcctattcaggagaaggctcccgatcccctccgtggaggctactac
cgcgctgacgaccccaacatgatgcacgaccgtgacatggaggttgacaccaccctcaag
accctgactcagaaggtcgagaagatccgcagccccgacggtacccagaagagccccgct
cgcatgtgccgcgacctgaggatgtgccaccctgagtggaagagcggaatgtactgggtc
gaccccaaccagggatctactctggatgccatcaaggtccactgcaacatggagaccggc
gagacttgcatctaccccagcgactctagcatccccatgaagaactggtacctcagcaag
aacatgaaagagaagaagcacgtctggttcagcgagtccatgaccggtggattccagttc
cagtacggcatggctggagctgattccgacgatgtcaacatccagatgaccttcatgcgc
ctgatgagcaaccaggcctctcagaacatcacataccactgcaagaacagcatcgcctac
atggactccaccaccggaaacctgaagaaggccctgctgctccagggatccaacgacgtc
gagatcagagccgagggcaacagccgcttcacatacagcgtcagcgaggacggctgcacg
tcacacactggctcatggggcaagacagtcattgactacaagacatctaaaacatcccgc
ctgcccatcattgacattgctcctatggatgttggtgcacctgatcaggagtttggcgtt
gaagttggccctgtctgcttcttgtaa

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