Takifugu flavidus (sansaifugu): 130540259
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Entry
130540259 CDS
T09160
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
tfs
Takifugu flavidus (sansaifugu)
Pathway
tfs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130540259 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfs03400
]
130540259 (msh2)
DNA repair and recombination proteins [BR:
tfs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130540259 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
130540259
NCBI-ProteinID:
XP_056915269
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Position
1:28445485..28596599
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AA seq
939 aa
AA seq
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MAVQPKQNLSMDSAAESGFVNFVFSLPDKPDTTFRVFDRSDFYTVHGKDAIYAAREVFKT
NGVIKYLGSGSRRLESVVLSKLNFEALARDLLLVRQYRVEVYKNHGKGSKDHDWRVEYKA
SPGNLTQFEEVLFGSGSGSEACAGVVAVRFAAGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLEALLVQISPKECLLAQGDGGADGSKLREVVQRGGALVSERKKAEFHSKDLVQDL
NRLLRAKKGQSVSSRTLPELDKQVAVSCLAAVVRFLELLSDESNFGSFSLTSLDLSQYMR
LDNAAVRALNLFQGSPDDSAGTHSLAGLLNKCRTPQGQRLLQQWIKQPLLDRTRIEERLD
LVESLVGDSELRQTCQEDLLRRFPDLHRLSRKFQRQSATLQDCYRVYQAVHHVAALLSAL
DRHTGRHQALMDAVFISPLRDLQSDFGKYQEMIETTLDMNQVEHHEFLIKASFDPALSDL
RSKMDEMEKSMQAVLSSAARELGLEAGKTVKLESNAALGFYLRVTCKEEKVLRNNKKFTM
LDVQKNGVRFTNGKLSSINEDYTKSRAEYEEAQNAIVKEIINIAAGYVDPLQALSDVTAQ
LDAVVSFAVASVSAPVPYVRPELLGEEGGPRRVALLQARHPCMEADADTAFIPNDITFVQ
GQKSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCERAELSVIDSILARVGAGDSQV
KGVSTFMAEMLETAAILRSATANSRYHLILIELGRGTSTYDGFGLAWAISQHIAAAIRCF
CLFASHFHELTALAAQQPTVHNLHVTALTSQNTLTMLYRVRPGVCDQSFGIHVAELASFP
PAVVAMAKDKAEELEEFQEAAGGKWEQEEGGEAKRRRLDKQVGEKLIQDFLDKARSLPVS
SMSEDEVKAELRRMKQELVAEGNAYIGDILARCGPVPTA
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaacctttcgatggactctgcagctgagagcggatttgtg
aacttcgttttctcccttccggacaaaccggacaccaccttccgggtgtttgaccgcagc
gacttctacacggttcacgggaaagacgccatttacgcagcgagggaggttttcaagacg
aacggagtcatcaaatacctgggctcaggtagccgcaggctggagagcgtggtcctgagc
aagctcaacttcgaggccctggccagagacttgctgctggtgaggcagtaccgggtggag
gtctacaagaaccacggcaaaggcagcaaagaccacgactggagggtcgagtacaaggcc
tctcctggaaacctaacccagtttgaggaggttctgtttggtagcgggtctgggtccgag
gcctgcgccggcgtggtggccgtgcgcttcgccgcgggggccgacggccagcgcgtggtc
ggcgtgggctacgtggacgccgcacagaggacgatgggcgtgtgtgagtttccagacaac
gagatcttctcaaacttggaggccctgctggtccaaatcagccccaaagagtgtctcctg
gcccagggcgacggcggcgccgacggcagcaaactgcgagaggtggtccagcgcggcggc
gctttggtctctgagcggaagaaagcagagtttcatagcaaggacctggtccaggacctc
aaccggctgctgcgggccaagaagggacagagcgtgtccagcaggacgctccccgagctg
gacaaacaggtcgccgtctcgtgcctggcggcagtggtgcggttcctggagctgctgtcg
gatgagtccaacttcggctccttcagtctcacgtccctggacctgtcccagtacatgagg
ctggacaacgctgccgtccgggctctgaacctgttccagggatctcctgacgactccgct
ggaacgcactcattggccggactcctgaacaagtgccgcacgccgcagggccagaggctg
ctgcagcagtggatcaagcagccgctgctggacagaaccaggatcgaggagaggctggac
ctggtggagagcttggtgggcgactcggagctcaggcagacgtgccaggaggacctgctg
cggcgcttccccgacctccaccgtctctccaggaagttccagcgccagagcgccacgctg
caggactgctaccgcgtctaccaggccgtgcaccacgtcgctgccctcctctcagccctg
gaccgacacacaggacgccaccaggcgctgatggacgccgtcttcatctcccccctcaga
gacctacagagcgactttgggaagtaccaggagatgattgaaaccactctggacatgaac
caggtggagcaccacgagttcctgatcaaagcttcctttgatccggcgttgagtgacctg
agatcaaagatggacgagatggagaagagcatgcaggccgtgctgagcagtgcagccaga
gagctgggtctggaggccggtaagacggtgaagctggagtccaacgccgcgctggggttc
tacctgagagtcacctgcaaggaggagaaggtgctgaggaacaacaagaagttcaccatg
ctggatgttcagaagaatggcgtgcgcttcaccaacgggaaactgagctcgatcaacgag
gactacaccaagagcagggcggagtacgaggaggcccagaacgccatcgtgaaggagatc
atcaacatcgccgcaggctacgtggaccccctgcaggcgctgagtgatgtcacggcccag
ctggacgccgtggtgagcttcgccgtggcgtccgtgtcggccccggtgccctacgtccgg
ccggagctgctgggcgaggagggggggcccagacgcgtggcgctgctgcaggccagacac
ccctgcatggaggcggacgcagacacggccttcatccccaacgacatcaccttcgtccag
ggacagaagagcttctacatcatcacagggccaaatatgggcggcaagtccacgttcatc
cggcaggtgggcgtgatcgccctgatggctcagattggctgcttcgtgccgtgcgagagg
gcggagctgagtgtgattgacagcatcctggcccgggtgggggccggggacagccaggtc
aaaggggtgtccaccttcatggcggagatgctggagacggccgccattctgcgctctgcg
accgccaactcccgatatcatctcatcctcatcgagctgggccgcggcacgtccacctac
gacggcttcggcctggcctgggccatcagccagcacatcgccgccgccatccgctgcttc
tgcctgtttgcctcgcacttccacgagctgacggcgctggcggcgcagcagcccaccgtg
cacaacctccacgtgacggcgctgacgtcccagaacacgctgacgatgctctacagagtc
agaccaggcgtctgtgaccagagcttcgggatccacgtggccgagctggcttccttcccc
cccgccgtggttgccatggcaaaagataaggcggaggagctggaggaatttcaggaagct
gcaggagggaaatgggagcaggaggaaggaggtgaagccaagagacggcgcctggacaaa
caggtgggagagaaactgatccaggacttcctggacaaggccagatcacttcctgtttcc
agcatgagtgaagatgaggtgaaggcggagcttcgcagaatgaagcaagagcttgttgcc
gagggcaacgcgtacatcggagacatcttggcacgctgtggtcccgtgccgacggcctga
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