Takifugu flavidus (sansaifugu): 130540343
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Entry
130540343 CDS
T09160
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
tfs
Takifugu flavidus (sansaifugu)
Brite
KEGG Orthology (KO) [BR:
tfs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfs03021
]
130540343 (scaf8)
03041 Spliceosome [BR:
tfs03041
]
130540343 (scaf8)
Transcription machinery [BR:
tfs03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130540343 (scaf8)
Spliceosome [BR:
tfs03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130540343 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
PRP38_assoc
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
130540343
NCBI-ProteinID:
XP_056915394
LinkDB
All DBs
Position
16:complement(10656546..10671831)
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AA seq
1391 aa
AA seq
DB search
MEAVKAFNIELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGAEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDLAAGIPPPSVTPVMPGSAAQVNNTTPGTPATPATPANIVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQLQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGTDSERNEEAKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKTISIEGQDSLFGPDNCVASTQNSSQAQLPETD
NKLDDSIDNQQQDMDLDEGPDGLEEENFEADEKKTMSARSRTHSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSRTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKVDDLDGFAEGGIIDQETVNDEWE
AVKIAEQAKDVISQQLSAESAAAANSQPETFNQQVTMMPVQLPVAQAVPSAVGLVPPAFP
VSMGIPPPGYGPPPFIRPGFNASQPPPGYMQAAQGGGMPSATTSLVQPSGATSQDVVKES
PFGAMIPPTTALPGSFMASAIPGAGMFNPVGVQSQQASGDKPAQAAESVDAAELTLQGMQ
NAVRSGMGLLGMHPSASLAHPLHQPGLAGQRMPGLMPLDVRANLLQSGAAGRFPLLMQPG
PAQQGASLLDSALQAQARARAPFPLDPFSKPPTLPSDNLSKVEDEPPSGADEGKDQDYRF
PPMEKPSTGLLRTPPREHREPLLGSGGRPPLLQTPGTQPARTSLVGRLQALAGFTPDTRW
NQIRGDFDERDGTRGGLQTPGGPKGFQEERSTPGQNFSSRFDSHPAATSGVAGGSGNHGG
VGGPQAWNRTGGANAAFDSERHQDLDERRRPWDRQRDRDERDFDFRRDMNGSRHSRERDR
DRGRDRDRDRDRDRKEHDRDADRDKERDRERDHGSWAPLLPLPTPLLPTPPLNPNLTLNQ
GKLLAPLKMNLQLQRFQSPLLSQAQNKLPLHGLNQPPPQATLKPPPTSQSQTVAPVPKSE
SPAPAETPPPQSSPPPHPFSENKSPTSEARAETEPLFRSESSPQTESPQAATQCPSKLAS
SPESKTPSESSPPYEAPCQDAPVAFTQAATPPQDSPCSLEEQQSPQKNKEGAPEQSPTPQ
HQWVNGPGIDISTPEPSTPESSPGSLRPASEAEQQERPFAFAKDVDSDQSEPMEDSTSQP
VLDSVTDTEGT
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcctttaacattgagttgtactcattgaatgagtacaagccgccc
atctccaaggccaagatgacccagatcaccaagtctggaattaaggctattaaattctac
aagcatgttgtccagagtgtggagaagttcatacagaagtgcaaaccagaatacaaagtt
cctgggctgtatgtcatcgactccatcgtcagacagtccaggcaccagtttggtgcagag
aaggatgtttttgcacccagattcagcaagaatatcattgcaacattccagcatctgtac
cgctgcccttcggatgacaagagcaagatagtgcgagtcctgaacctgtggcaaaagaac
gctgtttttaagagcgacatcatccagcctctgttggacctggcagctgggattcctcct
ccaagtgtcacgccagttatgcccggcagtgccgcccaagtcaacaacactacacctggg
accccggcgaccccagccactccggctaatatagtccaaggtctacctgattgggcgtct
cagatcaacaacactgacacggttgcagctgtagcgcagatcctgcagagcccccaggga
caacagttgcagcagctggtgcagagcctgcagttgcagcagcagaagccccagccgtcc
ctgctgcaggccttggacgccggcctggtggtgcagttacaagctctcacggctcagctc
actgctgcagccactgccaacagcctcaatcctctggagcagagggtctcctcctttaat
aagaaactgctcggcccttttgattttgggaccgactccgaacgcaacgaggaagcaaag
aaggactcctcgtcatctcagctacccatggtttcagagcccatcaatagctctctcttc
catcagctggctgagcagttacagcagcagaacctggagcagtttcagaagcagcttctg
gagcatcaacagcaccagcagaagaccatttctattgaagggcaggactcactgtttggc
ccagataattgtgtcgcatccacgcagaacagcagccaagcgcagcttcctgagactgat
aacaaactggatgactccatagacaaccaacagcaggatatggatctggacgaaggtccc
gatggcctggaggaggagaactttgaagctgatgaaaagaaaacgatgagcgcacgctcc
agaacacattcaaggtcgcgttcccggtctccaaagaggaggcggtccaggtcgcgctct
ggctcacggaagcggaagcaccgcaagaggtcgcgctcacgctctagagaccgcaagaga
aaatcttccaggtcttactccagcgaacggcgcgcacgggagcgggaaaaggaacggcaa
aagaaagggctgcctccgatcagatcgaggactctgagcgtgtgcagcaccactctgtgg
gtgggccaggtggacaaaaaggccactcagcaagatctcaccaacttatttgaagagttt
ggccagatcgagtctattaacatgatcccccccagaggctgtgcttacatctgtatggtg
cacagacaggacgcgtaccgtgcacgtcagaaactgagcaccggctcctttaagatcggc
tcaaaggtcattaagattgcctgggctctcaacaaaggagtaaagcaagagtacaagcaa
ttttgggacgtggacctgggggtcacatacatcccctgggagaaggtgaaggtggacgac
ctggatggctttgctgaaggaggaatcatagatcaggagaccgtcaacgatgaatgggaa
gcagtaaaaattgctgaacaagccaaggatgttataagccagcagttgagtgctgaaagt
gcagctgcggccaacagccagcctgagacctttaatcagcaggtcactatgatgcctgtg
cagctccctgtcgcccaggctgttcccagcgcagtgggcttagtacctcctgccttccct
gtctccatgggtatacctccaccaggctatgggccaccacccttcatcagacctggcttt
aacgcatcacaacctccccctgggtacatgcaggcagcacaggggggaggcatgccctca
gctactacttctctggtgcagccttcaggagccaccagtcaggatgtggtgaaggagtcg
ccgttcggggccatgattcctcccaccaccgctctccctggcagcttcatggcctcggcc
attccgggagcggggatgttcaatcccgtcggggtgcaaagtcagcaagcgtccggtgac
aaaccggcgcaggctgctgagagcgtggacgccgctgagctcactctgcaaggcatgcag
aatgcggtccgcagcgggatgggtctccttggcatgcatccctctgcctcccttgcacac
ccgttgcatcagcctggtttggccggacagagaatgccaggccttatgcctctggacgtg
cgagctaatcttcttcagtccggggctgctggccgctttcctctcctgatgcagccgggc
cctgcccagcagggtgccagcctcctcgacagcgccctccaagctcaggctcgggccaga
gctcctttccctttggaccctttcagcaagccccccacccttcccagcgataatttatcg
aaggtagaggacgagccaccgtctggggccgatgagggcaaagaccaggactaccgcttc
cccccaatggaaaaacccagcacgggcctgctgaggacccccccacgagagcatagggag
cctcttcttggtagcggaggcagacctccgttgcttcagaccccgggaacgcagccggcc
agaaccagccttgtaggacgcctgcaggctcttgctggtttcacccctgatactcgctgg
aatcagatcagaggggacttcgatgagagagatggcacccgaggggggctgcagacccca
ggcggtccaaaaggcttccaggaagagcgttctacgccggggcagaacttctccagtcgt
tttgacagccatcccgcggccacgagtggggtagctggaggctccggtaatcatggaggt
gtgggaggaccacaagcctggaaccgcaccggaggtgccaacgcagcttttgacagcgaa
cggcatcaagacctggatgagcgaagacgtccatgggacaggcaaagagacagagatgaa
agagattttgacttcaggagagacatgaacggtagccgtcacagcagggagagggacagg
gatcgaggccgggacagggaccgggaccgggacagggaccggaaagagcacgaccgcgac
gcagaccgcgacaaagagcgagaccgcgagagggaccatgggagctgggcgcctctccta
cctctgcctacacctttgcttccaactccacctcttaatcccaacctgaccctgaaccag
ggcaaactgctggctccgctcaaaatgaacctccagcttcagaggttccagtctcccctc
ctctctcaagctcagaacaagctccccctgcatggcctgaaccagccgccaccccaggcg
acgctcaagcctcctcccacatcacagagccagacggttgcacctgtgcctaagtcagaa
agccccgccccggccgagacccccccgccccagtcgtcgcctccgccccaccccttctct
gagaacaagagcccgaccagcgaggcccgcgctgagacggagcctttgttccgttcggaa
tcctctccacaaactgaaagtccccaggccgcaactcagtgcccctccaaactcgccagc
tctccagagagcaaaacccccagcgaaagctccccgccgtacgaggccccgtgccaggat
gcacccgtggccttcacgcaagccgcaaccccccctcaagactcgccatgctctctggag
gagcagcaaagcccacagaagaataaagagggcgctccggagcagtcccccacgccccag
caccagtgggtcaacggccccgggattgacattagcacgcccgagccctccaccccagaa
tcctcccccggttctctgcgtcccgctagcgaagcagagcagcaggagcggccttttgcc
tttgctaaggatgtagacagtgatcagagtgaaccaatggaggactctacaagtcagcca
gtgctagactctgtcacagacactgaggggacataa
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integrated database retrieval system
