Thalassotalea fonticola: RI844_06125
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Entry
RI844_06125 CDS
T10167
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tft Thalassotalea fonticola
Pathway
tft03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RI844_06125 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tft03400
]
RI844_06125 (mfd)
Enzymes [BR:
tft01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RI844_06125 (mfd)
DNA repair and recombination proteins [BR:
tft03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RI844_06125 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
Helicase_C_2
Glyco_tran_WecG
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WOH38792
LinkDB
All DBs
Position
1491232..1494759
Genome browser
AA seq
1175 aa
AA seq
DB search
MSQTSSIFSPLLAVSKANSNSKDKKQWANLHGSSASVAIYFAAANTESLTLLITEDTATA
LKLEHELLSINDQDLDICLFPDWETLPYDSFSPHQDIISQRLQTLYRLSRMSKGIVIVPA
HTLVHRIAPKQYIEANSLLIKTGDKKDLHQMRAELEASGYRAVEQVLEHGEFSARGAILD
IYPMGNNTPYRLDFFDDEIDSIRTFDVEDQRSKDTIASIELLPAHEFPTDKAAIELFRSQ
YRELLKANNDKDSVYHQVSKNILPAGIEYYLPLFFEQTETLFDYLPVNTQVLIHGDIDKN
LEQFNLDAQYRYEDRRYDPLRPLLPPDKLFLTREQLFATLKLHDRVNIKTASKDSKTISL
SDKAGNINFATTALPSVAVNHQLKQPLQAVCQFLQSAKQNQQQVLFIAESQGRRETLLEL
LSREKIAPQSVDDLSTFISSEHPIAITVNALNHGFIIDQADSKAKFNFAIITEDDLFTDR
VKQARRRTKQQETNSEAIFKNLTELSINQPVVHIEHGIGRYQGLQTFENQGISTEFLMLS
YANDAKLYVPVASLHLISRYSGSNSDTTPIHRLGTDSWSKAKKKAAEKIKDVAADLLDIY
AKRAQSHGYAFKRNKEDYLSFSESFGFEETLDQQNAITNVVADMLDHKTMDRLVCGDVGF
GKTEVAMRAAFIAANDSKQVVVLVPTTLLAQQHYENFRDRFANWAVNIEVLSRFKTAKQQ
KEVIAEIATGKIDILIGTHKLLSDNIKFKDLGLLIVDEEHRFGVKQKEKIKKLRANVDIL
TLTATPIPRTLNMAMGGMRDLSIIATPPAKRLAVKTFVRERETALIRESVLREVLRGGQV
YFLHNNVQTIEKTAQEIQELLPEAKITVAHGQMRERELERIMSDFYHQRYNVLVCTTIIE
TGIDIPTANTIIMDRADHLGLAQLHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAIKRLDA
IAQLEDLGAGFALATHDLEIRGAGELLGEDQSGQMASIGFSLYMEMLDQAVAALKEGKQP
SLEDLTAKQTEIELRVPALIPDDYIYDVSMRLSFYKRIASCKDNHELDEIQIELIDRFGL
LPQATKHIFFIAKLRLNAEDIGISRIDAGINGGSIEFNSSTKIDPMLIIGLIQQQPSIYK
MEGANKLKFAIKTEDNQARFTLISKMLDSLNKSVA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaaccagtagtattttttcgcctttattagctgtaagtaaagctaatagcaat
tcaaaagacaaaaaacagtgggccaatttgcacggctctagtgccagtgttgccatttat
tttgctgccgcaaacactgaaagtctgactttattaattactgaagataccgcaacggca
cttaagcttgaacacgaattgctcagcattaatgatcaagatttagatatctgcttgttc
ccagactgggaaactctgccatacgacagcttttctccgcatcaagacattatctcgcag
agactgcaaaccctatatcgcttatcacgtatgagtaaaggtattgtcattgttccagcc
catacactagtgcaccgcattgcgcctaagcagtatatcgaggcaaatagtttactgatt
aaaaccggtgacaaaaaagatttacaccaaatgcgagccgagcttgaagcaagtggttat
agggctgtggagcaagttcttgagcatggcgagtttagtgctcgtggtgctattttagat
atttatcctatgggtaataatacgccgtatcggttagacttttttgatgatgaaatagac
agtattcgtacctttgatgttgaagatcaacgctcgaaagacaccattgccagtatagaa
ttattgcctgctcacgaatttccaacagataaagcggcaatagaattatttagaagccaa
taccgtgaactgttaaaggcgaacaacgataaagactctgtctatcatcaggttagtaaa
aacattttaccagcaggtatcgaatactacctgccgttgttttttgagcaaacagagacc
ctgttcgactatttaccggttaatacgcaagtattaattcatggtgacattgataaaaac
ctagagcaattcaacctagatgcccagtaccgttatgaagacaggcgatacgatccatta
aggccattactaccacctgataagttattcttaactcgagagcaattgtttgcaacgtta
aagctacacgatagagttaatataaaaacagcaagtaaagacagtaaaaccattagccta
agcgataaagcgggtaatattaatttcgccaccacagctttaccttcagttgcggttaat
catcaacttaaacagcccttacaagccgtttgccagtttttacaaagcgcaaaacaaaac
cagcaacaagtattgtttatcgccgagagccaaggccgcagagaaacactgttagagtta
ctttctcgtgaaaaaattgcgccgcaaagtgtcgatgacctgagcacttttatttcatct
gagcacccaatagcgatcaccgttaatgcgctaaaccatggctttatcattgatcaggcc
gacagtaaggctaagtttaactttgcaattatcactgaagatgacttatttaccgataga
gtaaaacaagcaaggcgcagaactaaacaacaggaaaccaacagcgaagcgatatttaag
aatttaacggagctgtcaattaatcaacctgttgtccatatagagcacggaattggtcgc
tatcaaggcttacaaacatttgaaaaccaaggcattagcacagagtttttaatgttaagt
tatgccaatgatgccaagctttatgtgcctgttgcatctttgcatttaatttctcgctat
tccggctccaacagcgacacgacgcctattcataggttgggcactgactcttggtcaaaa
gcaaagaaaaaagccgcagaaaaaattaaagatgtagcagctgatttactcgatatttat
gccaagcgtgcgcaaagccacggttatgcattcaaacgaaataaagaagattatctcagt
ttttctgaaagttttggctttgaagagacactagatcaacaaaatgctattaccaatgtt
gttgccgacatgcttgaccataaaaccatggacagattggtctgtggtgatgttggtttt
gggaaaacagaagtcgccatgcgagcagcatttattgctgccaatgactctaaacaagtg
gttgtattagtacctaccacattacttgcccagcagcattatgaaaactttcgcgaccgc
tttgctaactgggcagtaaatattgaagtactgtcgcgctttaaaaccgcaaaacaacaa
aaagaagttatcgctgaaatagcgaccggtaaaattgatattttgatcggcacccataag
ttattgtctgataatattaaatttaaagacttaggcttacttattgttgatgaagaacac
cgctttggcgttaaacaaaaagaaaaaattaaaaaactacgtgccaatgtagatatttta
accctcactgctaccccaattccaagaacattaaatatggcgatgggtgggatgcgcgat
ttatctataattgcgactccgccagcaaaacgactcgcggttaaaacatttgtgcgtgaa
cgtgaaacggcattgatcagagagtcagtattgcgtgaagtattacgtggtggtcaagtt
tacttcttacataacaatgtacaaaccattgagaaaacggcacaagaaattcaagagtta
ctgccggaagcgaaaattaccgttgctcatggtcaaatgcgcgaacgtgaactagaacgc
attatgagcgacttttatcaccaacgttataatgtattagtgtgtaccactattatcgaa
acaggtatcgatattccaaccgcaaacaccataatcatggatagggccgatcatttaggt
ttagcgcaattacatcaattacgaggccgtgtgggtcgctcacatcatcaggcttatgct
tatttactgacaccacatcctaaacgtatgactaaggatgcgattaagcgtctagacgcc
attgcacaattagaagatttaggtgcaggatttgccttggcaacgcatgatctggaaata
cggggtgctggagagcttttaggagaagatcaatcagggcaaatggccagtattggtttt
agcttatacatggaaatgcttgatcaagcggttgcagcattaaaagaaggtaaacaaccg
tcattagaagatttaacggcgaagcaaactgaaattgaattacgcgtaccggcattaatc
cctgatgattacatttatgatgttagtatgcgcttatctttttataaacgtattgccagc
tgtaaagacaaccatgagcttgatgaaattcaaattgaacttatcgaccgttttggtcta
ctgccacaagcaaccaagcatatatttttcattgcaaaattgcgtttaaatgcagaagac
ataggtatttctcgcattgatgccggcattaatggtggctctatagaatttaatagcagc
acaaaaattgatcctatgcttataataggtttgatccaacaacagccttcaatatataaa
atggaaggcgctaataaacttaaatttgcaattaaaacagaagataaccaagcgcgcttt
acgttaatcagcaagatgctcgatagtttaaataaaagcgtagcctaa
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