Thalassotalea fonticola: RI844_09280
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Entry
RI844_09280 CDS
T10167
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tft Thalassotalea fonticola
Pathway
tft02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tft00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RI844_09280 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tft03021
]
RI844_09280 (rpoD)
Transcription machinery [BR:
tft03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RI844_09280 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
COG2_C
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
WOH39400
UniProt:
A0ABZ0GUN8
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Position
2264753..2266594
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AA seq
613 aa
AA seq
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MVQAPQSRLKELITKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIIRMINDMGIQVFENAP
DADELMMAEANTDEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIA
KRIEEGIREVQRSVSEYPPAINYLLEQWDNFEAEELRLTDIIIGFLDPDAPDEVAPTATH
VGSELSQEDLKDEDGEGSEDDEDEEEEDTGPDPELAREHFTELRKRYEAANTVIEAKGRN
HQDSVEAIDAISECFKEFRLIPKLFDRLVKGMRDVMDRVRVQERLIMKHCVVGAGMPKTH
FIKIFPGHETETEWLEAEIAAGHSYSEKLKIVSFDIERCVYKLTHLEEETFLSVQSIKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDAATTENLK
NATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEQLKSFLDGE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggttcaagccccacaatctagactaaaagaacttatcacaaaaggtaaggagcaaggt
tatttaacttttgctgaggtgaatgatcacctaccacaagatataattgattctgaccaa
gttgaagatattattcgcatgattaacgacatgggtattcaagtgtttgaaaacgcacct
gatgccgatgaattaatgatggccgaagccaatactgatgaagatgctgccgaagctgca
gcacaagcattagccactgtagaaagtgaaattggccgcacaactgaccctgttcgtatg
tatatgcgtgaaatgggtaccgtagaacttcttactcgtaagggcgaaattgttatcgcc
aagcgtatcgaagaagggatcagagaagtacaacgtagtgtttcagaatacccgccagca
attaactacttgttagagcagtgggataactttgaagctgaagaattacgtttaactgac
atcattatcggtttcttagacccagacgcaccagacgaggttgcaccaactgcaacgcac
gttggctctgaactttcacaagaagatcttaaagatgaagatggcgaaggctctgaagac
gatgaagatgaagaagaggaagatacaggcccagatcctgaacttgctcgtgaacacttc
actgaattacgtaaacgctacgaagcagcgaatacagtaattgaagcaaaaggccgtaat
catcaagattcagttgaagctatcgatgctatttctgaatgctttaaagaattccgctta
attccaaaattatttgatcgcttagttaaaggcatgcgtgatgtaatggaccgagttcgt
gtgcaagaacgtttgattatgaagcactgtgttgttggcgctggtatgccaaaaactcat
ttcatcaaaatttttccaggtcatgaaaccgaaaccgaatggttagaagctgaaattgca
gccggtcactcttattcagaaaaattaaaaatagtttctttcgacattgagcgttgcgta
tacaagcttacacaccttgaagaagaaacgttcttaagcgtacaaagtattaaagacatc
aaccgtcgtatgtcaattggtgaagcgaaagctcgccgagcgaaaaaagaaatggttgaa
gctaacttacgtcttgttatttcaattgctaaaaaatacaccaaccgtggtttacaattc
ttagatctgatccaagaaggtaacatcggtttaatgaaagccgttgataagtttgaatat
cgccgtggttataagttctcaacttatgcaacttggtggatccgtcaagcaattacacgt
tcaatcgccgaccaagcacgcactatacgtattccggtacatatgattgaaacgatcaac
aagctaaaccgtatttctcgtcaaatgcttcaagaaatgggccgcgagccaactcctgaa
gaattagctgaacgtatggttatgcctgaagataaaattcgtaaggtcttaaaaattgct
aaagagccaatctcaatggaaacaccaattggtgatgatgaagattcgcacttaggtgac
tttattgaagatggtagcggtgaattgcctgttgatgcagcaaccacagaaaaccttaaa
aatgctacccacgaagtattagcaggtttaaccgcccgtgaagctaaagttcttagaatg
cgtttcggtatcgacatgaatactgaccacacattagaagaagttggtaagcaatttgac
gtaacacgtgagcgtattcgtcaaatcgaagcgaaagcacttcgtaaacttcgccaccct
tctcgctctgagcaacttaagagtttcttagacggcgaataa
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