Thermobifida fusca: Tfu_0652
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Entry
Tfu_0652 CDS
T00265
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tfu
Thermobifida fusca
Pathway
tfu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tfu_0652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfu03400
]
Tfu_0652
Enzymes [BR:
tfu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Tfu_0652
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Tfu_0652
DNA repair and recombination proteins [BR:
tfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Tfu_0652
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
TackOD1
Auto_anti-p27
HpcH_HpaI
DZR
DUF6311_C
Motif
Other DBs
NCBI-ProteinID:
AAZ54690
UniProt:
Q47S77
LinkDB
All DBs
Position
754525..755415
Genome browser
AA seq
296 aa
AA seq
DB search
MPELPEVEVVRRGLEKWVVGASFGEVEVLHPRAVRRHAPGAADFAARVSGCGVTEARRRG
KYLWLTLDSGEALLAHLGMSGQLLVQPRHAAAERHLRVRLPLTARQGHDPEAPQELRFVD
QRTFGHLLVDRLVDDGTGTGLPSVISHIARDPLDPAFDEDAFAAALCRKRTELKRALLDQ
SLISGIGNIYADEALWMSQLHWATPTEALSRSQVATLLAAVREVMVAALAQGGTSFDSLY
VNVNGESGYFARSLNAYGRNDQPCARCGTPIQRETFMNRSSYSCPRCQPRPRHARA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgcctgaagtcgaggtggtgcggcgcggcctggaaaagtgggtggtcggc
gcgtcgttcggcgaggtcgaggtcctgcatccgcgtgcggtccggcgccacgcgccgggt
gcggcggatttcgccgcgcgcgtcagcgggtgcggggtcacggaggcgcgccgccgcggc
aagtacctctggttgaccttggactccggggaggcgctcctcgcccacctggggatgagc
ggccaattgctggtccagccgcgccatgccgcagccgaacggcatctgcgggtccgcctg
cccctgacggcgcgtcaaggccacgacccggaggccccgcaagagctgcgtttcgtcgac
cagcgcacgttcggccacctgctcgtggaccggctggtggatgacggcaccggtaccggg
ctgccttcggtgatctcccacattgcgcgcgaccccctggaccctgctttcgacgaggac
gcgttcgccgcggcgctgtgccgcaaacgcactgagctgaaacgcgccctcctcgaccag
tccctcatcagcgggatcggcaacatctacgccgatgaagcgctgtggatgtcccaactg
cactgggcgacccctaccgaggccctgtcgcgctcccaggtcgccacgctgctggccgcg
gtccgcgaggtgatggtcgcggccctggcccagggcgggacctcgttcgacagcctttat
gtgaacgtcaacggggagagcggctattttgcgcgcagtctcaacgcctacggccggaac
gaccagccgtgtgcacgctgcggcacgccgatccaacgggagacgttcatgaaccgctcg
tcgtacagttgtccgcggtgccagccgagaccgcggcacgcgcgagcgtga
DBGET
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