Thermobifida fusca: Tfu_0805
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Entry
Tfu_0805 CDS
T00265
Name
(GenBank) metal-dependent phosphohydrolase, HD region
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tfu
Thermobifida fusca
Pathway
tfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tfu_0805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfu03019
]
Tfu_0805
Messenger RNA biogenesis [BR:
tfu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tfu_0805
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KhpA-B_KH
KH_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
AAZ54843
UniProt:
Q47RS4
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All DBs
Position
950784..952289
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AA seq
501 aa
AA seq
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MDGVADLVVIALLGALTLLTAGHVLALRSRSRAVAAQAQQWADRIRADAENAARSHQDRL
LAEAAAYRAELDRREQRIAAQEQRIERELRRLDAARRQLDERTAQLDQRAAELARLAEER
RAVLEQAAALTAEEAKAALVADIVDQAKREAAVLVRAIERDARTNGEARARRIISLAIQR
LAGEQTSESVVRAVPLPEEAMKGRIIGREGRNIRAFETVTGVDLIVDDTPGVVLLSCFHP
LRRETARLTLEKLVADGRINPHRIEEAYEASRREVEQQCVRAGEDALLEVGISDMHPELV
ALLGQLRYRTSYGQNVLAHLVESAHLAGMMAAELGADVPLAKRCALLHDIGKALTHEVEG
SHAVIGAQLARRYGECEEVAHAIEAHHNEVEARTVEAVLTQAADAISGGRPGARRASMES
YVKRLQRMEEIAYAVSDGVEKVFVMQAGREIRVMVQPEAVDDVQAQVIARDIAKRVEEEL
TYPGQVRVTVIRESRAVETAR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggacggagtggccgaccttgtggtcatcgcacttctcggagcgttgacgctgctgacc
gcgggtcatgtgcttgcgctccgctcgcgcagccgagccgtcgccgcgcaggcgcagcag
tgggccgaccgcatccgggccgacgcggagaacgccgcccgcagccaccaggaccgcctg
ctcgcggaagccgccgcataccgggcagaactcgaccggcgggagcagcggatcgccgcc
caggagcagcgcatcgagagggagctgcgccggttggatgcggcgcgccgccagcttgac
gagcggaccgcccagctcgaccagcgcgcagccgaactggcccgcctagcagaagaacgg
cgggctgttttagagcaggctgcggcgctcaccgcggaggaggcgaaagccgcgctcgtt
gcagacatcgtggaccaggcgaaacgggaagccgctgtcctcgtccgcgcgatcgagcgg
gacgcccgcacgaacggggaggcccgggcccgcagaatcatctccctggcgatccagcgg
ctggcgggcgagcagaccagtgaatcggtggtccgcgccgtgcccctgcccgaggaggcg
atgaaggggcgaatcatcggcagggaagggcggaatatccgggcgttcgaaacagtgacg
ggggtcgatctcatcgtcgacgacaccccgggggtggtgctgctgtcgtgctttcacccg
ctgcggcgggaaacagcgcggctcaccttggagaaactcgtggccgacggccggatcaac
ccccaccggatcgaagaagcctacgaagccagccggcgcgaagtggagcagcagtgcgtg
cgcgccggagaagacgccctccttgaagtggggatctccgacatgcacccggagttggtg
gcgctgctcggacagttgcggtaccgcacctcgtatgggcagaacgtgctcgcccacctt
gtggaaagcgcccacttggcggggatgatggccgctgaactgggcgcggacgtgcctctc
gcgaaacggtgcgcgctcctccacgacatcggcaaggcgctcacccacgaagtggagggc
agccacgcggtgatcggcgcgcagctcgcccgccgctacggggagtgcgaggaagtggcg
cacgcgatcgaagcccaccacaacgaggtggaagcgcgcacggtcgaagcggtgctgacc
caggccgcggacgcaatcagcgggggacggccgggggcgcggcgcgcctccatggagtcg
tatgtgaaacggctgcagcggatggaggagatcgcctacgccgtcagtgacggggtggag
aaggtgttcgtgatgcaggcggggcgggagatccgggtgatggttcaaccggaggcggtg
gacgacgtgcaggcccaggtgatcgcccgggacatcgcgaaacgggtggaggaggagctc
acctatccgggacaggtccgggtgacggtgattcgggagtcccgcgcggtggaaaccgcc
cgctga
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