Thermobifida fusca: Tfu_1189
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Entry
Tfu_1189 CDS
T00265
Name
(GenBank) DNA polymerase A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tfu
Thermobifida fusca
Pathway
tfu03030
DNA replication
tfu03410
Base excision repair
tfu03420
Nucleotide excision repair
tfu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tfu_1189
03410 Base excision repair
Tfu_1189
03420 Nucleotide excision repair
Tfu_1189
03440 Homologous recombination
Tfu_1189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfu03032
]
Tfu_1189
03400 DNA repair and recombination proteins [BR:
tfu03400
]
Tfu_1189
Enzymes [BR:
tfu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tfu_1189
DNA replication proteins [BR:
tfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Tfu_1189
DNA repair and recombination proteins [BR:
tfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Tfu_1189
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tfu_1189
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
DNA_pol_lambd_f
HHH_5
HHH_2
IMS_HHH
HHH
Motif
Other DBs
NCBI-ProteinID:
AAZ55227
LinkDB
All DBs
Position
1385427..1388216
Genome browser
AA seq
929 aa
AA seq
DB search
MSSAHPRIRRVVNTQATPEQTRPAETGEGGGRPRLLLVDGHSMAFRAFYALPAEKFVNSA
GQATNAIYGFTSMLVKLLREEQPTHIAVAWDRSEPTFRHEEYAEYKAGRSETPPEFPSQV
GLLQELLGLIGVTSLSVPGYEADDIIATLTTRGLAEGMDVLIASGDRDTFQLVGEHCTVL
YPGRSLSDLIRMTPEAVEAKYAVPPERYCDLAALVGEKSDNLPGVPGVGPKTAAKWLAKY
GSLDALVAHAHEIGGKAGQNLRDHLDDVLRNQRLNRLATDVELGVDVTGMTLGHWNRDGV
NLLFDNLEFASTLRDRLFAVLSEQAGDDSAEPVQDEGFSVELVDPAPGTLGDWLAAEIAA
GARTGVALEWSGERDGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLH
GVKWALRALWARGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQ
LTLDLEGTGDDQDTARRELALRALATVELALALDAELTRREGLDLLHNLELPLAEVLARM
EDAGIAADLTYLRDLEAEFAAAVRQAVDEAHRLVGREFNLGSPKQLQQILFDELGLPKTK
RIKTGYTTDADALAWLAAQTDNELPVILLRHRDQTKLRTTVEGLIKTIAEDGRIHTTFHQ
TVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQLLTADYSQIELRIMAHLSED
EALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLAYGLSDYGLAQQLGIS
PKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRYLPDLNSDNRQRREMAE
RMALNAPIQGSAADIIKLAMLRVDRALRENGLASRMLLQVHDELVLEVAPGELDTVRELV
VEHMSQAQQLRVPLAVSVGVGPNWHDAAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcgcatcctaggattcgtcgtgtggtgaacacacaggcgacccccgagcag
acccgtcccgccgagaccggtgaaggaggtgggcgcccccggctgctcctcgtggacggc
cactccatggccttccgcgcgttctacgcgctcccggcagaaaaattcgtcaacagcgca
ggccaggccaccaatgccatctacggcttcacgtcgatgctggtcaagctgctccgcgaa
gagcagcccacgcacatcgccgtggcctgggaccgctccgagcccacgttccggcatgag
gagtacgccgagtacaaggcgggccgctccgaaaccccgccggagttccccagccaggtg
ggcctgctccaagaactgcttgggctgatcggggtcaccagcctgtccgtcccgggatac
gaggctgacgacatcatcgccacgctcaccacgcggggtctcgccgaaggcatggacgtg
ctcatcgcctccggggaccgcgacaccttccagctggtcggcgagcactgcacggtgctc
tacccgggcaggagcctgtccgacctgatccgcatgaccccggaggcggtcgaagccaag
tacgcggtgccgccggaacgctactgcgacctggcggccctggtgggggagaagtccgac
aacctgcccggagtgccgggggtggggcccaagaccgcggccaagtggctggccaagtac
gggtcgctcgacgcgctcgtcgcccacgcccacgagatcggcggcaaggctgggcagaac
ctccgcgaccacctcgacgacgtcctgcgcaaccagcggctcaaccggctcgccaccgat
gtggagctcggcgtcgacgtcaccgggatgacgctgggccactggaaccgcgacggcgtc
aacctgctcttcgacaacctggagttcgcctcaaccctccgcgaccgcctgttcgccgtg
ctgagcgagcaggcgggcgacgacagcgccgaacccgtccaagacgaagggttctccgtc
gaactggtcgacccggcacccggcaccttgggcgactggctcgccgcggagatcgccgcc
ggggcccgcactggggtggccctggagtggagcggggagcgggacggtgacatcatccgc
ctggcgcttgccgtcccctcgggccgcgcggtctgcctcgatccgacccaactggacccc
gcggacgaggccgcgctcaccgcatggctggccgaccccgcctatcccaaggtgctgcat
ggcgtcaaatgggcactgcgcgccctgtgggcccgcggctggaccctggacggggtcgaa
tccgacaccgcaatcgccgcctacctgctggaacccgggcgacgcaacttcgagctcgcc
accctgtgcctccgctacctaggccgggaactgacagagcacaacgccgaaggcgctcag
ctcaccctggacctcgaagggaccggcgacgaccaggacacggcccgccgcgaactggcg
ctccgagccctggccacggtggagctggccttggccttggacgccgagctcacccggcgt
gaaggactcgacctgctccacaacctggaactccccctggccgaggtgctggcccgcatg
gaggatgcggggatcgccgccgacctcacctacctgcgggacttggaagccgagttcgcc
gccgcagtccgccaggcagtcgacgaagcgcaccgcctggtgggccgcgagttcaacctc
ggatcgcccaaacagttgcagcagatcctcttcgacgagctggggctgcccaagacgaag
cggatcaaaaccggctacaccactgacgcggacgcgctggcgtggctggccgcgcagacc
gacaacgagctccccgtcatcctgctgcgccaccgcgaccagaccaagctgcggaccacg
gtggaagggctgatcaagacgatcgccgaggacgggcgtatccacaccaccttccaccag
acggtgaccgccacgggacggctcagctcagccgagcccaacctgcagaacatcccggtg
cgcaccgacgccggtcggcgcatccgccgcgccttcgtggtcggtgaaggctacgagcag
ttgctcaccgccgactacagccagatcgaactgcgcatcatggcccacctgtcggaggac
gaggcgctgatcgaagcgttccacagcggcttcgacttccacgcgcagatcgcttcgcgg
gtcttccggatcccggtggaccaggtcgacggggaggcacgcgcccggatcaaggccatg
aactacggcctggcctacgggctgagcgactatgggctggcccagcagctgggtatttcg
ccgaaagaagcccgggtcctcatggaggagtacttctcccactttgggaaggtccgcgac
tacctcgaagccgtggtggtccgggcacggcgcgaaggttacaccgcgacgatcctgggc
cgccgccgctacctgcccgacctcaacagcgacaaccggcagcggcgggagatggctgag
cggatggcgctcaacgcgcccatccaagggtcggccgcggacatcatcaagctggcgatg
ctgcgcgtggaccgggcgctgcgcgagaacgggctcgcctcgcggatgctgctgcaagtc
cacgacgaacttgtgctggaggtcgcccccggcgagctggacaccgtgcgggagctcgtg
gtggagcacatgtctcaggcgcagcagttgcgggttccgcttgccgtgtcggtgggggtg
ggccccaactggcatgacgcagctcactga
DBGET
integrated database retrieval system
