Thermobifida fusca: Tfu_1901
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Entry
Tfu_1901 CDS
T00265
Name
(GenBank) HRDC:3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tfu
Thermobifida fusca
Brite
KEGG Orthology (KO) [BR:
tfu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tfu03016
]
Tfu_1901
Enzymes [BR:
tfu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Tfu_1901
Transfer RNA biogenesis [BR:
tfu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Tfu_1901
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Esterase
Motif
Other DBs
NCBI-ProteinID:
AAZ55934
UniProt:
Q47NN5
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All DBs
Position
2225998..2227260
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AA seq
420 aa
AA seq
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MLNSKTEESPDPESTASEQTPEAPLLSEPRDGIPPVVADDEELARVAAKFAAGSGPVAVD
AERASGYRYGQRAYLVQLRRAGAGTALIDPVACPDLSVLRDAVGDAEMVLHAAHQDLPCL
TEVHLRPRRLFDTELAGRLLGYQRVGLGAMVERVLGVRLAKEHAAVDWSTRPLPEDWLRY
AALDVEVLIELRDALEAELAETGKLEWARQEFAAVLAAPPKEPRPDPWRRTSGIHRVRSQ
RGLGVVRELWLERDRIARERDLSPGRVLQDSAIVEAALAMPRTPQELTAIKTFTVRLARR
YVPVWLKAINRVRDMKPAELPQPSPPGYGPPPTNRWADRDPAAARRLEAARSVVAEIAER
VGMPTENLLQPDAVRRLAWSPPSQVSVDSVAEHLRTHQARDWQIELTAAALAEALRAADR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaactccaagaccgaagaaagccccgatcctgagtccactgcctcagaacagacg
cctgaagctcccctgctgagcgagcccagagacgggattcccccggtcgtcgccgacgat
gaggaactggcacgcgtggccgccaagttcgccgcgggcagcgggccggtcgcggtggac
gccgaacgcgcctcgggataccgctacggacagcgcgcctacctggtccaactacgccgg
gccggggccggcacggcgctgatcgacccggtggcctgtcctgatctgtcggtgttgcgg
gacgcggtcggcgacgccgagatggtgctgcacgcggcccaccaggacctgccctgtctc
accgaagtgcacctgcgcccgcggcgcttgttcgacaccgagttggccgggcggctgctc
ggctaccagcgggtcggcttgggtgccatggtggagcgggtcctgggcgtccggctcgct
aaagagcatgctgcggtggactggtcgacccggccgctgccggaggactggctgcgctat
gccgcgctggatgtcgaggtcctcatcgagctgcgggacgcgttggaagctgaactggct
gagacgggcaagctggagtgggcacgccaggagttcgcggcggtactggccgctccgccg
aaagagccgcgtcctgatccgtggcggcgcacttcggggatccaccgggtccgcagccag
cgcggcttgggtgtggttcgggaactgtggctggaacgcgaccggattgcccgggagcgc
gacctgtctccgggccgggtgctgcaagactcggcgatcgtggaggccgccctggccatg
cccaggaccccgcaggagttgaccgcgatcaaaacgttcacggtccgcctggcccgccgc
tatgtcccggtgtggctcaaagccatcaaccgggtgcgggacatgaaaccggcggagctg
ccccagccgagtccgccaggctacgggcccccgcccacgaaccggtgggccgaccgggat
ccagccgcggcgcggcggctcgaggcggcgcgttccgtggtcgcggagatcgcggagcgg
gtgggcatgccgacggagaacctgctgcagccggatgcggtccgccgtctcgcctggtcg
ccgccgagccaggtcagtgtcgactcggtggccgagcacctgcgcacgcaccaggcccgt
gactggcagatcgagttgactgcggctgcgctggccgaggcgctgcgtgccgcggaccgt
tga
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