Tsuneonella flava: IDJ81_01340
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Entry
IDJ81_01340 CDS
T07616
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tfv
Tsuneonella flava
Pathway
tfv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tfv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IDJ81_01340 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfv03021
]
IDJ81_01340 (rpoC)
03400 DNA repair and recombination proteins [BR:
tfv03400
]
IDJ81_01340 (rpoC)
Enzymes [BR:
tfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IDJ81_01340 (rpoC)
Transcription machinery [BR:
tfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IDJ81_01340 (rpoC)
DNA repair and recombination proteins [BR:
tfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IDJ81_01340 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
YqfD
Motif
Other DBs
NCBI-ProteinID:
QSB44847
LinkDB
All DBs
Position
complement(267482..271816)
Genome browser
AA seq
1444 aa
AA seq
DB search
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDSFSAG
IGAEAVKFMLMDLDLERERDDLLEELATTKSKLKPAKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMLLADMAEVHQALEV
GAVTLHSKITSRVPQTDEAGKQYMKRVDTTPGRMLIGECLPKNHKVPYEVINRLLTKKDI
GDVIDEVYRHTGQKDTVLFADAIMSLGFRHAFRAGISFGKDDMIIPDSKVELVDQTKSLV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMDEIRARPRDADGREAQINSIYMM
SHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIVETDCKTQNALEMRAIVQGGSVIASLGERILGRTVA
EDIVNAATGEVIVKAGTLLDEPMVKTIEEAEVQVAKIRSPLVCEAEQGVCATCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLESISDGKIEYRDMPTI
IDKRGKILSMARNGELAVIDAEGREREIHKVPYGTVLMFKDGDAVKEGDRLAEWDPFTLP
IITEQSGMVRYQDLIDGTTMEERVDETTGIAQRVVTELRASGRKKKEDLRPRLTLLGEGQ
TDDGETEAQRYMLAPGTTLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEAR
MPKDNAVIAKISGKIEFVREYKAKRKIAIVPEEGEAVEYLIPKTKVIDVQEGDFVKKGDT
LISGSPNPHDILEVMGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDG
GDTVLLPGEQVDLEEMNEVNSKLGRGKQPATGTPILLGITKASLQTRSFISAASFQETTR
VLTQAAVEGKRDSLIGLKENVIVGRLIPAGTGAGMNRMRVTASSRDAALRAQWKKAQDAI
IAANTAAEERAAEALRDPLDDTGNDPLAAVEGETHGTDADAGDYLQTAEDTATEDTVVED
KAED
NT seq
4335 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctggccaagccggaaaccttcgaccagatc
cagatcggcatcgcatcgcccgaacgcatccgttcgtggtcgttcggtgaaatcaagaag
cccgaaacgatcaattaccgcacgttcaagcctgagcgtgacggcctgttctgcgcgcgc
atcttcggtccggtgaaggactacgaatgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtgactgtgaccaaggtccgccgcgaa
cgcatgggccacatcgaactggctgcgccggtcgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgggtgctgtac
ttcgaaagctacatcgtcaccgaaccgggcctgaccccgctggaaaaattccagctgctg
accgaagacgaactgctcgaagcgcaggacgaatacggcgaagacagcttcagcgccggg
atcggtgccgaagcggtcaaattcatgctgatggacctcgaccttgagcgtgagcgcgac
gatctgctggaagagctggcgaccaccaagtccaagctcaagcccgccaagatcatcaag
cgtctgaaggtcgtcgaaagcttcatcgattcgggcaaccgccccgaatggatgatcctc
gaagtgatcccggtcatcccgcccgaactgcgcccgctggtgccgctcgacggtggccgg
ttcgcaacgtcggatcttaacgacctttatcgccgcgtcatcaaccgtaacaaccgcctc
aagcgcctgatcgaactgcgcgcgccggacattatcgtccgcaacgaaaagcgtatgctg
caggaagcggtcgatgcgctgttcgataacggtcgtcgtggccgcgtgatcaccggggcg
aacaagcgtccgctgaaatcgctgtccgacatgctcaagggcaagcagggccgtttccgt
cagaaccttctgggtaagcgcgtcgactattcgggccgttcggtcatcgtgaccgggccg
gaactcaagctgcaccagtgcggcctgccaaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgatgccaagggtctgtcgatgacccttaagcaggcgaagaag
tgggttgagaaggaacgcaaggaagtctgggacatcctcgacgaagtgatccgcgagcac
ccggttctgctgaaccgcgcgccgacgcttcaccgtcttggcattcaggcgttcgaacct
gtgctgatcgaaggcaaggcgattcagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggtgaccagatggcggtccacgtgccgctgtcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtccaccaacaacattctcagccccgcgaacggcaagccgatc
atcgttccgtcgcaggacatggtgctgggcctctattacctgtcgatggatcgcgaaggc
gaaccgggcgaaggcatgttgctggccgatatggccgaagtgcatcaggcgctcgaagtg
ggtgcggtgacgctccactcgaagatcaccagccgcgttccgcagaccgacgaagcgggc
aagcagtatatgaagcgggtggataccactccgggccgtatgctgatcggtgaatgcctg
ccgaagaaccacaaggttccttacgaagtcatcaaccgtctgctgaccaagaaagacatc
ggcgacgtgatcgacgaagtctatcgtcacaccggccagaaggacaccgtgctgtttgcc
gacgcgatcatgtcgctcggtttccgccacgcgttccgtgcgggcatttcgttcggcaag
gacgacatgatcatcccggattcgaaggtcgaactggtcgatcagaccaagtcgctcgtc
gccgattacgaacagcagtatcaggacggcctgatcacgcagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggcggacgccatgatggacgaaatc
cgtgcgcgtcccagggatgccgacggtcgtgaagcgcagatcaactcgatctacatgatg
agtcactccggtgcgcgtggttcgccagcgcagatgaagcagctcgccggtatgcgcggt
ctgatggccaagccttcgggcgaaatcatcgagcagccgatcatctcgaacttcaaggaa
ggtctgaccgttcttgaatacttcaactcgacccacggcgcccgtaagggtctggccgac
accgcgctcaagacggcgaactcgggttacctgactcgccgtctggtcgacgtgtcgcag
gactgcgtgatcgtcgaaaccgactgtaagacccaaaacgcgctggaaatgcgcgcgatc
gttcagggtggttcggtgattgcgtcgctgggcgaacgtatcctcggccgcaccgtggcc
gaagatatcgtcaacgcagcgaccggcgaagtgatcgtgaaggcaggcactttgctcgac
gaaccgatggtcaagaccatcgaggaagccgaagtgcaggtggcgaagatccgctcgccg
ctggtgtgcgaagccgaacagggcgtttgcgcgacctgctacggccgtgaccttgcccgc
ggtacaccggtgaacatcggtgaagcggttggcgtgatcgcggcacagtcgattggtgaa
ccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcgcagctcaacgaa
accagccatctggaatcgatctccgacggtaagatcgaataccgcgatatgccgactatc
atcgacaagcgtggcaagatcctgtcgatggcgcgtaacggtgagctggcagtgatcgac
gccgaagggcgcgaacgcgaaatccacaaggtgccgtatggtactgtcctgatgttcaag
gatggcgatgcggtgaaggaaggcgatcgcctggccgaatgggatccgttcactctgccg
atcatcaccgaacagtcgggtatggtccgttatcaggacctgatcgacggcacgacgatg
gaagaacgcgtcgatgaaacgacgggtattgcccagcgtgtcgtcaccgaactgcgtgca
tcgggtcgcaagaagaaggaagacctgcgtccgcggcttacgctgttgggcgaaggccag
accgacgacggcgaaaccgaagcacagcgttacatgctcgctccgggcacgacactgtcg
gtggaagatggccagcaggtcgaagcgggtgacattctcgcccgtgcttcacgcgaagca
gctaagacccgcgacatcaccggcggtctgccgcgggtggccgaattgttcgaagcgcgt
atgccgaaggacaatgcggttatcgccaagatcagcggcaagatcgaattcgttcgcgaa
tacaaagccaagcgcaagatcgcgatcgtgccggaggaaggtgaagcagtcgagtacctg
atccccaagaccaaagtgatcgacgtgcaggaaggcgacttcgtgaagaagggcgatacg
ctcatctccggttcgcccaacccgcacgacattctggaagtcatgggtgtcgaggcgctg
gccgaatacctcgtgaacgaaatccaggaagtctatcgtttgcagggtgtgaagatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaaatcaccgacggc
ggcgacactgttctcctgcctggcgaacaggtcgatctggaggaaatgaacgaagtcaat
tccaagcttggcaggggcaagcagcctgcaacgggcacgccgatcctgctcgggatcacc
aaggcgagcctgcagacccgctcgttcatctccgccgcttcgttccaggaaaccacccgt
gtgctgacgcaggcggcggtcgaagggaagcgcgattcgctgatcggtctgaaggaaaac
gtgatcgttggccgcctgatcccggcgggcaccggtgccggtatgaaccgtatgcgcgtg
acggcttccagccgcgatgccgctctgcgggctcagtggaagaaggcgcaggacgcgatc
atcgctgccaacaccgctgcggaagaacgcgccgccgaagcgctgcgcgatccgctcgac
gataccggcaacgatccgctggctgcggtcgaaggtgaaacccacggcaccgacgccgat
gcaggcgattacctgcaaactgcagaagatactgcgaccgaggacaccgtggtcgaagac
aaggcagaggattga
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integrated database retrieval system
