Tsuneonella flava: IDJ81_10850
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Entry
IDJ81_10850 CDS
T07616
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tfv
Tsuneonella flava
Pathway
tfv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tfv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IDJ81_10850 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfv03021
]
IDJ81_10850 (rpoD)
Transcription machinery [BR:
tfv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IDJ81_10850 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Disulph_isomer
THOC7
DUF6712
DUF4168
FUSC
Motif
Other DBs
NCBI-ProteinID:
QSB43848
UniProt:
A0ABX7K7P1
LinkDB
All DBs
Position
2307934..2309970
Genome browser
AA seq
678 aa
AA seq
DB search
MASDDGNGKDDAPLIDLNEASIKKLITRAKRRGYVTVDELNEALPQDQLSSEQIEDVMSA
ISEMGVNIVEKDEDAEEDSDSDEGVDALDSSDDSDDSEDGGTATKAKPAAAKKKETVERT
DDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMIIGLCESPITFHAIIQWSEALNAE
EMQLREILDLDAMLSKEPPVDKMEEGAEDDDGEISEETAGPSIRDDDDDDDDDVDSDDED
GEEGSSKRREEEDDEDNTLSLAQMEAALKPDALERFARITDLFKKFEKLQAERVDVLGRG
EDFPAAKEKKYEELREQLTAEVESVQFHASKIEFLVDNLYAFNRRLTALGGQMLRLAERH
KVKRVDFLKAYIGNELDDNWLTDNVKKDKKWAAFAEKEADAVERIRAEIADIASQTGMAL
PEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQG
REPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAA
IQSNLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKAL
RKLKHPSRSRKMRSFLDQ
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgacgacggtaacggcaaagacgacgcccccctcatcgacctcaacgaagct
tcgatcaagaagctcatcacgcgcgccaagcgccgcggatacgtgacagtcgacgagctc
aacgaagcgctcccgcaggatcagctttcgtcagagcagatcgaggatgtcatgtccgcc
atcagcgaaatgggcgtcaatatcgttgaaaaagacgaagacgccgaagaggatagtgac
tccgacgaaggtgtggacgcactcgattcttctgacgatagtgatgacagcgaagatggc
ggcactgccaccaaggcaaaacccgccgctgccaaaaagaaagaaactgtcgagcgcacc
gatgacccggtgcgaatgtacctgcgcgaaatgggcgcggtggaattgctcagccgcgaa
ggcgaaatcgccatcgccaagcgcatcgaggccgggcgcgacacgatgatcatcggacta
tgtgaaagcccgattacatttcacgcgattatccaatggtccgaagcgctcaatgccgag
gaaatgcagcttcgcgaaattctcgatctcgatgccatgctgtcgaaagagcctcccgtc
gacaagatggaagagggcgctgaagacgacgacggtgagatctccgaagaaaccgccggt
cccagcatccgcgacgacgatgacgacgatgacgacgatgtcgacagcgatgatgaagat
ggcgaggaaggttcctccaagcggcgtgaagaagaggacgacgaggacaacaccttgtcg
ctcgcgcaaatggaagctgcgctcaagccggacgctctggaacgcttcgcgcgtattacc
gacctgttcaagaaattcgaaaaacttcaggctgaacgcgtcgacgtactcggccggggc
gaagattttccggcagcaaaggaaaagaaatacgaggaacttcgcgaacagctgaccgca
gaggtcgaaagcgttcagtttcacgcgagtaagatcgaattcctggtcgacaacctttat
gcatttaaccgccgcctgaccgccctgggcggccagatgctgcgccttgctgaacgccat
aaagttaaacgggtcgacttccttaaagcttatatcggcaacgagctggacgataactgg
ctgactgataacgtcaaaaaagacaaaaagtgggccgctttcgcagagaaagaggctgac
gcagtcgagcgtatccgtgctgaaatcgcagacattgccagccagaccggtatggctctg
ccagagtttcgccggatcgttaacatggtccagaagggcgaacgcgaagcgcgtatcgcc
aagaaggaaatggtcgaggcgaaccttcggctggtgatttcgattgccaaaaaatacacc
aatcgcggcctgcaattcctggatttgattcaggaaggaaacatcggcctgatgaaagcg
gtcgataaattcgaataccgccgcggctacaaattcagcacttatgccacctggtggatc
cggcaggccattacccgctcgattgccgatcaggcccgcacaatccgcattccggtacat
atgatcgaaacgatcaataaacttgtgcgaacgagtcgacagttcctccacgaacagggc
cgcgaaccaacaccggaggaaatggctgaacgcctttccatgcctctggaaaaagttcgt
aaagttatgaagatcgccaaagagccgatcagtctggaaacgcccatcggcgatgaagaa
gattcccaccttggcgatttcatcgaagataagaacgcgattatccctgtggatgctgcg
atccagtccaacctcaaggaaacggttacccgtgtgctcgccagcctcacgccgcgtgag
gaacgtgtgcttcgcatgcgctttggcatcggcatgaacaccgatcacacgctggaagaa
gtcgggcagcaattctctgtgacacgtgagcgtatccgacaaatcgaggcgaaggctctg
cgtaagctgaagcatccaagccgcagcagaaaaatgcgtagcttcctcgatcagtga
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