Thermococcus gammatolerans: TGAM_1005
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Entry
TGAM_1005 CDS
T00920
Name
(GenBank) RNA-binding protein, containing S1 RNA binding domain
KO
K07573
exosome complex component CSL4
Organism
tga
Thermococcus gammatolerans
Pathway
tga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGAM_1005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tga03019
]
TGAM_1005
Messenger RNA biogenesis [BR:
tga03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TGAM_1005
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TGAM_1005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
OB_RRP5_4th
PCB_OB
A2L_zn_ribbon
DZR
HVO_2753_ZBP
Prok-RING_1
Zn_ribbon_NOB1
Zn_ribbon_3
CvfB_2nd
Zn_ribbon_IS1595
RRP4_S1
Trm112p
Motif
Other DBs
NCBI-ProteinID:
ACS33507
UniProt:
C5A5J5
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All DBs
Position
complement(954969..955556)
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AA seq
195 aa
AA seq
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MEAKKPAKEGELVLPGDYLGVIEEYLPGEGVKEENGNLIATRAGRVKINREKMEISVEPV
TDTPPLPEVGDTVLAQVLEVKPQVVIVQLLRIEGKGSREIATSKLAGIHVSQVKNGFVED
MSREFKVGDIVRARVISNEKSPIQLTTRAPDLGVVYAFCSRCRTPLIRRGDKLICPKCGN
VETRKLSTLYRKMVI
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggaggctaaaaaaccggccaaagaaggagagcttgttctcccgggggattatctgggt
gtaatcgaggagtacctgcccggcgagggtgttaaagaggagaacggaaacctcatcgca
actcgggccgggagggtcaagataaacagggagaaaatggagataagcgttgaaccggtg
accgacacgccaccgcttccagaggtgggggacactgtcctagctcaggttttggaggta
aaaccccaggtagttatagtccagctccttagaatcgaggggaaggggagcagggagata
gcgacgtccaagctcgcgggtatacacgtttcccaggtaaagaacggcttcgttgaggat
atgagcagggagttcaaagttggtgatatagttcgggcgagggtcatctcaaacgagaag
agcccgatccagctcactacccgggcccccgaccttggtgtggtttacgccttctgctcg
cgctgcaggacgccgctcatacggcgcggggacaagctcatatgtcccaagtgcggcaac
gtcgagacgagaaagctttcaactctctaccgcaagatggtgatctga
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