KEGG   Thermococcus gammatolerans: TGAM_1005
Entry
TGAM_1005         CDS       T00920                                 
Name
(GenBank) RNA-binding protein, containing S1 RNA binding domain
  KO
K07573  exosome complex component CSL4
Organism
tga  Thermococcus gammatolerans
Pathway
tga03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tga00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TGAM_1005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tga03019]
    TGAM_1005
Messenger RNA biogenesis [BR:tga03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TGAM_1005
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     TGAM_1005
SSDB
Motif
Pfam: ECR1_N EXOSC1 S1 Auto_anti-p27 OB_RRP5_4th PCB_OB A2L_zn_ribbon DZR HVO_2753_ZBP Prok-RING_1 Zn_ribbon_NOB1 Zn_ribbon_3 CvfB_2nd Zn_ribbon_IS1595 RRP4_S1 Trm112p
Other DBs
NCBI-ProteinID: ACS33507
UniProt: C5A5J5
LinkDB
Position
complement(954969..955556)
AA seq 195 aa
MEAKKPAKEGELVLPGDYLGVIEEYLPGEGVKEENGNLIATRAGRVKINREKMEISVEPV
TDTPPLPEVGDTVLAQVLEVKPQVVIVQLLRIEGKGSREIATSKLAGIHVSQVKNGFVED
MSREFKVGDIVRARVISNEKSPIQLTTRAPDLGVVYAFCSRCRTPLIRRGDKLICPKCGN
VETRKLSTLYRKMVI
NT seq 588 nt   +upstreamnt  +downstreamnt
atggaggctaaaaaaccggccaaagaaggagagcttgttctcccgggggattatctgggt
gtaatcgaggagtacctgcccggcgagggtgttaaagaggagaacggaaacctcatcgca
actcgggccgggagggtcaagataaacagggagaaaatggagataagcgttgaaccggtg
accgacacgccaccgcttccagaggtgggggacactgtcctagctcaggttttggaggta
aaaccccaggtagttatagtccagctccttagaatcgaggggaaggggagcagggagata
gcgacgtccaagctcgcgggtatacacgtttcccaggtaaagaacggcttcgttgaggat
atgagcagggagttcaaagttggtgatatagttcgggcgagggtcatctcaaacgagaag
agcccgatccagctcactacccgggcccccgaccttggtgtggtttacgccttctgctcg
cgctgcaggacgccgctcatacggcgcggggacaagctcatatgtcccaagtgcggcaac
gtcgagacgagaaagctttcaactctctaccgcaagatggtgatctga

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