Thermococcus gammatolerans: TGAM_1689
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Entry
TGAM_1689 CDS
T00920
Symbol
cdc48-1
Name
(GenBank) AAA family ATPase, CDC48 subfamily (Cdc48)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tga
Thermococcus gammatolerans
Pathway
tga04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TGAM_1689 (cdc48-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tga03019
]
TGAM_1689 (cdc48-1)
03009 Ribosome biogenesis [BR:
tga03009
]
TGAM_1689 (cdc48-1)
04131 Membrane trafficking [BR:
tga04131
]
TGAM_1689 (cdc48-1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tga04147
]
TGAM_1689 (cdc48-1)
Messenger RNA biogenesis [BR:
tga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TGAM_1689 (cdc48-1)
Ribosome biogenesis [BR:
tga03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TGAM_1689 (cdc48-1)
Membrane trafficking [BR:
tga04131
]
SNARE
SNARE associated proteins
Others
TGAM_1689 (cdc48-1)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TGAM_1689 (cdc48-1)
Exosome [BR:
tga04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TGAM_1689 (cdc48-1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
CDC48_N
AAA_lid_3
AAA_16
RuvB_N
CDC48_2
AAA_2
AAA_22
AAA_5
AAA_14
TIP49
AAA_33
Vps4_C
nSTAND3
AAA_28
RNA_helicase
Bac_DnaA
AAA_24
NPHP3_N
Sigma54_activat
Mg_chelatase
IstB_IS21
AAA_7
DUF815
AAA_18
ABC_tran
ATPase_2
AAA_17
Parvo_NS1
nSTAND_NTPase5
NB-ARC
AAA_25
TsaE
AAA_3
SLFN-g3_helicase
PhoH
Zeta_toxin
ATPase
AAA_lid_PRS2_C
Zot
AstA_C
Motif
Other DBs
NCBI-ProteinID:
ACS34191
UniProt:
C5A7H9
LinkDB
All DBs
Position
1592535..1594925
Genome browser
AA seq
796 aa
AA seq
DB search
MSERKEIKLKVASAYQRDVGRGIVRIDRKAMRELGVQPGDIVEIIGTKNTAAVVWPAYPE
DEGLSIIRMDGTIRKNAGVGLGDEVTVRKADVKEAKKVIVAPTEPIRFGRDFVEWLHSRL
VGRPVVRGDYIKVGILGQELTFVVTATTPAGIVQITEFTDFQVSEKPVKEVAKTATLGVT
YEDIGGLKDVIQKVREMIELPLKHPEIFEKLGIEPPKGVLLYGPPGTGKTLLAKAVANEA
NAHFIAINGPEIMSKYYGESEERLREVFKEAEENAPAIIFIDEIDAIAPKREETHGEVEK
RVVSQLLTLMDGLKSRGKVIVIAATNRPDAIDPALRRPGRFDRELEVGVPDKQGRKEILQ
IHTRGMPIEPDFRRDKVIEILEKLRGDERFRDVIDRAIEKVEKAKDEEEIKRDLRELDER
LYDEVKARLIDALLEELAEVTHGFVGADLAALAREAAMAALRRLIKEGKIDFEAEHIPRE
VLEELKVTRKDFYEALKMVEPSALREVLLEVPNVRWDDIGGLEDVKQELREAVEWPLKYP
EAFMGLGITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIR
EIFRKARQAAPTVIFIDEIDAIAPRRGTDVNRVTDRLINQLLTEMDGIQENSGVVVIGAT
NRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRKVPLAEDVNLEELAKRTEGYT
GADIEAVVREAAMLAMRRALQEGIIRPGMKADEIRRKVKVTMRDFEEALKKIGPSVSKET
MEYYRKIQEQFKQSRG
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaggaaggaaatcaagcttaaggtcgcgtccgcttaccagagggacgttgga
aggggaatcgtcaggattgacaggaaggctatgcgcgagctcggcgtccagccaggcgac
atagtggagattatcggaaccaagaacaccgccgccgttgtctggcccgcctatcccgag
gacgagggactcagcatcatcagaatggacggaaccataaggaagaacgcgggagttgga
ctcggcgacgaggttactgtcagaaaggccgacgttaaggaggcgaagaaggtcatcgtt
gccccaaccgagccgatcaggtttggaagggacttcgtcgagtggctccacagcaggctc
gtcggcagacccgtcgtcaggggagactacataaaggtcggaatcctcggtcaggagctc
accttcgtggtaaccgcgactacgccagctggaatcgttcagataaccgagttcaccgat
ttccaggtcagcgagaagcccgtcaaggaggtcgccaagaccgccacgctcggtgttacc
tacgaggacatcggtggcctgaaggacgtcatccagaaggtcagggagatgatagagctc
ccgctcaagcacccggagatattcgagaagctcggcatcgagcctccgaagggtgtcctg
ctctacggtccgccgggaacaggtaagaccctccttgccaaggccgtcgccaacgaagcc
aacgcccacttcatagccatcaacgggccggagataatgagcaagtactacggcgagagc
gaggagagacttagagaggtcttcaaggaggcagaagagaacgcaccggcgataatcttc
atcgacgagattgacgcgatagctccaaagagggaagagacccacggcgaggttgagaag
agggttgtttcacagctcctgacgctgatggacggcctcaagagcaggggcaaggtcata
gtcattgccgcaaccaacaggccagatgccatcgacccggccctcaggaggccaggaagg
tttgacagggagcttgaggttggcgttccagacaagcagggcaggaaggagatactccag
atacacaccaggggaatgcccatcgagcccgacttcaggagggacaaggtgatagagata
ctcgagaagctccgcggtgacgagaggttcagggacgttatagacagggccatagagaag
gtcgagaaggcgaaggacgaggaggagataaagagggacctcagggagcttgacgagagg
ctctacgacgaggtcaaggcgaggctcatcgacgccctgctggaggagctggccgaggtc
actcacggcttcgttggagcggacctcgcagcgctcgcaagagaggcggcgatggccgct
ctaaggaggctcatcaaggagggcaagattgacttcgaggccgagcacatacccagagaa
gtcctcgaagagctcaaggtcaccaggaaagacttctacgaggcgctcaagatggtcgag
ccgtcagcgctcagggaggtcctcctcgaggtgccgaacgtccgctgggacgacatcgga
ggccttgaggacgtgaaacaggagctcagggaagctgtagagtggccgctcaagtatcca
gaagcattcatgggactcggaatcaccccgccgaagggaatcctgctctacggtccaccg
ggaactggtaagactctcctcgccaaggccgtagcgaacgagagtgaggccaacttcatc
gccatcaagggtccagaggtgctcagcaagtgggtcggcgagagcgagaagaacatcagg
gagatattcaggaaggctcgtcaggccgctccgacggtgatattcatagacgagattgac
gccatcgcaccgcgcaggggcaccgacgtcaaccgcgtaaccgacaggctcatcaaccag
ctcctgactgagatggatggtattcaggagaacagcggtgtcgtcgtcattggagccacc
aacaggccggacatactcgacccggctttgctcaggccaggaaggtttgacaggctgata
ctcgttccagcgccggatgagaaggccaggctggagatattcaaggtgcacaccaggaag
gttccgctggcggaggatgtcaacctcgaggagctcgccaagagaaccgagggctacaca
ggtgccgacattgaggcagtggtgagagaggccgcgatgctcgccatgaggagggcgctc
caggagggcatcatcaggcccggaatgaaggccgacgaaatcaggaggaaggtcaaggtc
accatgagggacttcgaggaggcactgaagaagattgggccgtcggtgagcaaggagacg
atggagtactacaggaagatacaggagcagttcaagcagtcgcgcgggtaa
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