Thermococcus gammatolerans: TGAM_1718
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Entry
TGAM_1718 CDS
T00920
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase (lig)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tga
Thermococcus gammatolerans
Pathway
tga03030
DNA replication
tga03410
Base excision repair
tga03420
Nucleotide excision repair
tga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TGAM_1718 (lig)
03410 Base excision repair
TGAM_1718 (lig)
03420 Nucleotide excision repair
TGAM_1718 (lig)
03430 Mismatch repair
TGAM_1718 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tga03032
]
TGAM_1718 (lig)
03400 DNA repair and recombination proteins [BR:
tga03400
]
TGAM_1718 (lig)
Enzymes [BR:
tga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TGAM_1718 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
TGAM_1718 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
TGAM_1718 (lig)
DNA replication proteins [BR:
tga03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
TGAM_1718 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
TGAM_1718 (lig)
DNA repair and recombination proteins [BR:
tga03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
TGAM_1718 (lig)
NER (nucleotide excision repair)
Other NER factors
TGAM_1718 (lig)
MMR (mismatch excision repair)
Other MMR factors
TGAM_1718 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
TPR_1
Tcp10_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACS34220
UniProt:
C5A7K8
Structure
PDB
PDBj
LinkDB
All DBs
Position
1623263..1624942
Genome browser
AA seq
559 aa
AA seq
DB search
MRYSELAELYRRLEKTTLKTLKTKFVADFLKKTPDDLLEIVPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVPEKEIENSIKDTGDLGESVALALKKRRQKSFFSQPLTIKRVYNTF
VKVAEASGEGSQDRKMKYLANLFMDAGPEEGKYIARTVLGTMRTGVAEGILRDAIAEAFK
VKVELVERAYMLTSDFGYVAKIAKLEGNEGLSKVSIQIGKPIRPMLAQNAASVKDALIEM
GGEAAFEIKYDGARVQVHRDGDKVIIYSRRLENVTRSIPEIVEAVKASLKPSKVIVEGEL
VAVGENGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDILYVNGESLIDTKFTERRKR
LEESVEESDKIKLAEQLVTKKVDEAEEFYKRALELGHEGLMAKRLDAIYEPGNRGKKWLK
IKPTMENLDLVIIGAEWGEGRRAHLLGSFLVGAYDPESGEFVPVGKVGSGFTDEDLVEFT
KMLKPLIIREEGKFVEIEPKVVIEVTYQEIQKSPKYKSGFALRFPRYVALREDKSPEEAD
TIERVAQLYELQERFKAKR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaggtactccgagttagccgaactttacaggaggcttgagaagaccacgctcaaaacg
ctcaagacgaagtttgtggcggacttcctcaagaaaacgcccgacgatttgctcgagata
gtgccctacctgattctcggcaaggtcttcccagactgggacgagcgcgagctcggcgtc
ggagaaaaactcctgataaaggccgtttcgatggcaacgggtgtccccgagaaggaaatc
gagaactcgattaaagataccggcgacttgggcgagagcgtggctttagccctcaagaag
agaaggcagaagagcttcttcagccagcccctcacgataaagcgcgtctacaacaccttc
gttaaggttgccgaggcgagcggagaggggagccaggacaggaagatgaaatatctggcc
aatctcttcatggacgccgggcctgaggagggaaagtacatagcgaggacagtcctcgga
actatgaggaccggggttgccgagggaatcctgcgcgatgccatagccgaggcctttaag
gtaaaggttgagcttgttgagagagcttatatgctaacgagcgacttcggctacgtggcg
aagatagcgaagcttgaagggaacgaggggctctcgaaggtgagcatacagatcgggaag
ccgataaggcccatgttggcacaaaacgccgcgagcgttaaggacgcactcattgagatg
ggcggtgaagccgccttcgagataaagtacgacggagcgagggttcaggtccaccgcgac
ggggataaggtgataatctactcgaggaggcttgagaacgtcacccgctcgattccagag
atagtcgaggcggtaaaggcctcgctgaagccttctaaggtcatagtagagggtgagctg
gttgccgttggcgagaacggtcgtccgagacccttccagtacgtcctgaggaggttcagg
aggaagtacaacatcgaggagatgattgagaagatcccgctcgagctcaacctctttgat
attctctacgtcaacggcgaaagtctcatcgacacgaagttcaccgagaggcggaagagg
ctcgaggagagcgtcgaggagagcgataagataaagctcgccgaacagctcgttacgaag
aaggtcgacgaagccgaggagttctacaagagggccctggagcttggccacgaggggctc
atggcaaagaggcttgacgcgatctacgagcccggaaatcgcggaaagaaatggctcaag
atcaagcccacgatggagaacctcgatttggtcatcatcggcgccgagtggggcgaggga
aggcgcgcacacctgctcggttccttcctcgtcggtgcgtacgacccggagagcggtgag
ttcgtcccggttgggaaggtcgggagcggtttcaccgacgaggatctggtagagttcacc
aagatgctcaagcccctcatcatccgcgaggagggcaagttcgtcgagattgagccaaag
gtggtcatagaggttacctaccaggagatacagaagagtccgaagtataagagcggtttc
gcgttaaggttcccgcgctacgtggcgttgagggaagataaaagtccggaggaggcggac
acgatagagagagtcgcccagctctacgagctccaggagaggttcaaggcgaaaaggtaa
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