Thermococcus gammatolerans: TGAM_1722
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Entry
TGAM_1722 CDS
T00920
Symbol
cdc48-2
Name
(GenBank) AAA family ATPase, CDC48 subfamily (Cdc48)
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tga
Thermococcus gammatolerans
Pathway
tga04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TGAM_1722 (cdc48-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tga03019
]
TGAM_1722 (cdc48-2)
03009 Ribosome biogenesis [BR:
tga03009
]
TGAM_1722 (cdc48-2)
04131 Membrane trafficking [BR:
tga04131
]
TGAM_1722 (cdc48-2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tga04147
]
TGAM_1722 (cdc48-2)
Messenger RNA biogenesis [BR:
tga03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TGAM_1722 (cdc48-2)
Ribosome biogenesis [BR:
tga03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TGAM_1722 (cdc48-2)
Membrane trafficking [BR:
tga04131
]
SNARE
SNARE associated proteins
Others
TGAM_1722 (cdc48-2)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TGAM_1722 (cdc48-2)
Exosome [BR:
tga04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TGAM_1722 (cdc48-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_22
TIP49
AAA_5
CDC48_2
AAA_14
AAA_33
nSTAND3
AAA_28
RNA_helicase
AAA_24
IstB_IS21
Mg_chelatase
Sigma54_activat
NPHP3_N
DUF815
AAA_7
Bac_DnaA
ATPase_2
Vps4_C
AAA_18
ATPase
Parvo_NS1
ABC_tran
AAA_17
TsaE
NB-ARC
AAA_3
Zeta_toxin
SLFN-g3_helicase
PhoH
AAA_lid_PRS2_C
Zot
Motif
Other DBs
NCBI-ProteinID:
ACS34224
UniProt:
C5A7L2
LinkDB
All DBs
Position
complement(1628370..1630886)
Genome browser
AA seq
838 aa
AA seq
DB search
MIFGRGEENVEEIKLRVAEALKVDVGRGIVRFDKQYQRKLGVSTGDIVELIGSRSTAAIV
ANAHPDDRGLDIIRMDGYIRKNAGVSIGDYVTVRKAQVQEAKKVVLAPAQKGVILQIPGD
IVKQNLLGRPVVKGDIIVASSRGETGYYGSPLDDLIRGLFEAMPIGFGELKFVVVNTVPK
GIVQITYNTEVEVLPQAVEVREESIPEVTYEDIGGLSDAIQKIREMVELPLKHPELFERL
GIEPPKGVLLYGPPGTGKTLLAKAVANEANAHFIAINGPEIMSKFYGESEERLREIFKEA
EENAPSIIFIDEIDAIAPKREEVVGEVEKRVVSQLLTLMDGLKGRGKVIVIAATNRPDAI
DPALRRPGRFDREIEVGVPDKQGRKEILQIHTRGMPLEPSFDKEEVLTVLDRLAGRTDKF
AEEVAGIRPLIEAAQSEEEIKGILKKNGELYSEVKAKLIDRMLDRIADRTHGFVGADLAA
LAREAAMVVLRRLIQEGKVSPEQERIPPEVLQELRVREEDFYEALKMVEPSALREVLIEV
PNVRWDDIGGLEDVKQELREAVEWPLKYPKAFERLGITPPKGILLYGPPGTGKTLLAKAV
ANESEANFIAIRGPEVLSKWVGETEKRIREIFRKARQAAPTVVFIDEIDAIAPARGSYEG
GRHLDTLINQLLTEMDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKAR
LEIFKVHTRRVPLAEDVDLAELAKKTEGYSGADIEALVREAALIALRRAVSRLPREIVEK
QGEEFLESLKVSRRDFEMALRKVKPSITPYMIDYYKNFEESRKRRGGKEARGVDYYTF
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
gtgatctttgggagaggcgaggagaacgtggaggaaataaagctcagggttgcagaggcc
ctgaaggtggacgttggcagggggatagtgaggttcgacaagcagtaccagcggaagctc
ggcgtatccaccggggacatagtcgagctcataggttcgcgctcaaccgccgcgatagtg
gctaacgctcacccggacgacaggggcctcgacatcattaggatggacggctacatcaga
aagaacgcgggggttagcataggcgactacgtgacggtcaggaaggcccaggttcaggag
gcgaagaaagttgtcctggccccggcccagaagggggtcatacttcagatacctggggac
atagtcaagcagaacctacttgggaggcccgttgtgaagggggacataatagtcgcgagc
agcaggggtgagaccgggtattatgggagtcccctcgatgatctcatcaggggcctcttt
gaggccatgccaattggctttggcgagctgaagttcgtggtcgtgaacacagtccccaag
ggtattgtccagataacctataacaccgaggttgaggttctcccacaggcggtcgaggta
cgtgaggagagcattccggaggtcacatacgaggacatcggtggcctgagcgatgctatt
cagaagatccgcgagatggttgagctccctctcaagcatccggagctgtttgaaaggctg
ggaatagaaccgcctaagggagttctcctctacggtccgccgggaacgggtaagacactc
ctcgcgaaggccgtcgccaacgaagccaacgcccacttcatagccatcaacgggccggag
ataatgagcaagttctacggcgagagcgaggagaggctcagggagatcttcaaggaagcc
gaggaaaacgcaccgagcatcatcttcatcgacgagatagacgcgatagctccgaagagg
gaggaagttgtcggtgaggtcgagaagagggttgtttcacagctcctgacgctgatggat
ggtctgaagggcaggggcaaggtcatagtcattgccgcaaccaacaggcccgacgccatt
gaccccgcgctgagaaggccgggaaggtttgacagggagattgaggttggcgttccggac
aagcagggcaggaaggagatactccagatacacaccaggggaatgccccttgagccgtcc
tttgacaaggaggaagtcttgacggtgcttgacaggctggccgggaggacggataaattc
gccgaggaagttgcggggataaggcccctcattgaggccgcccagagcgaggaggaaatc
aaggggatcttgaagaaaaacggtgagctgtactccgaagtgaaggcaaagctgattgac
aggatgctcgacaggatagcggacaggacgcacggcttcgttggagcggacctcgcagcg
ctcgcaagagaggccgctatggtcgttctcaggaggctcattcaggagggcaaggtgagt
ccggagcaggagcgcattccgccagaggttcttcaggagctcagggtcagggaggaggac
ttctatgaggccctcaagatggtcgagccgtcagcccttagggaagtcttgatagaggtt
ccgaacgtccgctgggacgacataggaggccttgaagacgtgaagcaggaactcagggag
gcggtagaatggccgcttaaatatcccaaggcctttgagaggctcggcataacaccgccg
aagggaatactcctctacggtccgcccggaacgggtaagactctcctcgccaaggctgtg
gcaaacgagagcgaggcaaacttcatagccatcagggggccagaagttctcagcaagtgg
gtcggcgagactgagaaaaggataagggagatattcaggaaggctcgccaggccgctccg
acggttgtcttcatagacgagatcgatgcgatagcacctgccagaggaagctacgaggga
ggaagacaccttgatacccttatcaaccagctcctcactgagatggatggtattcaggag
aacagcggtgtcgttgtcattggagctactaacagacctgatattattgatccagcactg
ttgaggcctgggcgctttgacaggctgatactcgttccagcgccggacgagaaggccagg
ctggagatattcaaggtgcacacgaggagagttccccttgctgaggacgtggatcttgcg
gagctggcaaagaagacggaaggctactccggggcggacatcgaggccctcgtcagggag
gcggcgttgatagccctcaggagggccgtttcaaggcttccaagggagatcgtggaaaag
cagggggaggagttccttgagagcctgaaggtctcgaggagggactttgagatggccctc
cggaaggtcaagcccagcataaccccctacatgatcgactactacaagaacttcgaggag
agccggaagagaaggggcggcaaggaggccaggggggtcgattactacaccttctga
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integrated database retrieval system
