Thermococcus gammatolerans: TGAM_1910
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Entry
TGAM_1910 CDS
T00920
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD-family (deaD)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tga
Thermococcus gammatolerans
Pathway
tga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGAM_1910 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tga03019
]
TGAM_1910 (deaD)
03009 Ribosome biogenesis [BR:
tga03009
]
TGAM_1910 (deaD)
Enzymes [BR:
tga01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TGAM_1910 (deaD)
Messenger RNA biogenesis [BR:
tga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TGAM_1910 (deaD)
Ribosome biogenesis [BR:
tga03009
]
Prokaryotic type
rRNA helicases
TGAM_1910 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACS34412
UniProt:
C5A1Z3
LinkDB
All DBs
Position
1834446..1835657
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AA seq
403 aa
AA seq
DB search
MRLSKVREFVKMSFERLGLSESSLEAVRRKGFEVPTDIQREVIPRLLEGEVDIIGQSQTG
TGKTAAFALPIIEAIDPNEKTVQAIILTPTRELALQVANEIKSLRGKKRVYVYAIYGGQP
IGPQIRALERGVHVVVGTPGRVLDHLNRGTLDLSSVRFFVLDEADRMLDMGFVDDIEEIM
RRAPQEKRILMFSATMPMGILLLAKKYMRNPEVILVSRDEVVPEMVDQEYVEVLPARKYE
KLKEVLGEGFYGIIFCHTKRETRELSERLRRDSFRADALNGDMSQAARERTFGRFKEGKI
NVLVATDVAARGLDVREISHVINYSLPMNTEQYIHRIGRTGRMGKRGKAITFLKPGEIGR
FRDIARKAKVEVKRSKLSERIPKRFREEDLEREYRRRWGRKRF
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctgagcaaagtaagggagtttgtaaagatgagttttgaaagattgggcttgtca
gaatcaagtttagaggcagttagaaggaagggttttgaagtcccaacggacattcaaagg
gaagtcatcccacgcctccttgagggggaggttgatataatcggccagtcccaaacggga
acagggaaaactgcggcgtttgcacttcctataatagaggcaatcgaccccaacgaaaaa
acagtgcaggccataatactcacccccaccagagagctggcacttcaggtggcgaacgag
atcaaaagcctccgggggaagaagagggtctacgtctacgcgatctacggcggtcagccg
atagggccgcagataagggccctcgaaaggggagttcatgtggtcgttggaactccgggc
agggtgctcgatcatctaaaccggggtaccctggatctcagctcggtaaggttcttcgta
cttgacgaggccgatagaatgctcgacatgggtttcgtcgatgacatcgaggagataatg
aggcgcgcgccccaggagaagaggatcctgatgttctcggcgacgatgccaatgggaatt
ctcctcctggcaaagaagtacatgcggaaccccgaggtcattctcgttagcagggatgag
gtggtacccgagatggttgatcaggagtacgtggaggtccttcctgcgagaaagtacgaa
aagctgaaagaggttctcggggaggggttttacggcataatcttctgccacaccaagagg
gaaacccgggaactgagcgagaggctgaggagagacagcttcagggccgatgccctcaac
ggggacatgagccaggccgcgagggagagaaccttcggtcgctttaaggagggaaagatc
aacgttctcgttgccacagacgttgccgcgagaggactagacgtcagggagataagtcac
gtgataaactactccctccccatgaacacggaacagtacatccacaggataggcaggact
ggcagaatgggaaagagaggaaaggccattacttttcttaaaccaggtgagattggcagg
ttcagggacatagcaaggaaagccaaggtcgaggtgaagagatccaagctgagtgagaga
attcccaagcgcttcagggaagaggatctcgagagggagtacaggagaagatggggaagg
aaaaggttctaa
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