Thermococcus gammatolerans: TGAM_1926
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Entry
TGAM_1926 CDS
T00920
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B (rpoB)
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
tga
Thermococcus gammatolerans
Pathway
tga03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tga00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TGAM_1926 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tga03021
]
TGAM_1926 (rpoB)
Enzymes [BR:
tga01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TGAM_1926 (rpoB)
Transcription machinery [BR:
tga03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
TGAM_1926 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zf_2nd_IFT121
Auto_anti-p27
DUF5817
RUBY_RBDX
Zn_ribbon_NOB1
RNA_pol_Rpb2_45
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ACS34428
UniProt:
C5A209
LinkDB
All DBs
Position
complement(1849745..1853113)
Genome browser
AA seq
1122 aa
AA seq
DB search
MSARGVTVVDVTPDDLWIVMESYWKEKGLVRQHLDSYNAFIEHGLQEVINEFGGVKPDIP
NFEVKFGKIRLGEPIFQEAQGQRRPLYPMDARIRNLTYSAPLFLELIPVVNGIEQEPVEV
RIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLV
EKDERQKKVVAKVFSYRHGYRALITVESRKDGILYVSIPNVPKPVKFVYVMRALGLLSDK
EIVEAISEDPRIQQVLFNNLEDASDIRTQEEALDFIGRLSLPGQPKEYRLRRAEHIIDNN
LLPHMGVEPENRKAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRV
AFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSVRPDVLSERIEHALATGSWPGGRT
GVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVK
NLALMSQITTGIPEEEVKEYILKLGVVPIEERRPSPGLYRVYLNGVLIGTIEDGKALVQT
IRSDRRAGKISDVINVALYEEGDVREIYINSDDGRVRRPLIIVENGRPKLTREHVEAIKN
GTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPE
HNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAG
QNFVVAVLSYGGYNMEDAIVINKASIERGLARSTFFRTYEAEEKRYLGGQMDRFEKPDPT
IKGYLGDRYYRNLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGIALQERRETSV
AVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDM
PWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAFIGEPEEKLRKEL
EELGFKHTGREVMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPT
EGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENCGHIALEDKRRGKV
YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPSLKLKDRV
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgagaggagttactgttgttgatgtcactcccgacgatctctggattgttatg
gaatcctactggaaggaaaagggtctcgtcaggcagcacctcgattcttacaacgcattc
attgagcacggcctccaggaagttataaatgagttcggtggtgtcaaaccggacatcccc
aactttgaggtcaagttcggaaagatacgcctcggagagcccatctttcaggaggcccag
gggcagagaagacccctgtatccaatggacgcccgcataagaaacctcacctactccgcc
ccgctgttccttgagctgatacccgttgtaaacggcatagagcaggaaccagttgaagtc
cgcatcggtgaacttcccctcatgctgaagtccaaggcctgcaggctctacggcctcagc
gacgaggaactcatagagctcggcgaggatccgaaggatccgggaggatacttcataatc
aacggttctgagagggttatcgtctctatcgaagatctggccccgaacaaaactctggtc
gagaaggatgagaggcagaaaaaggtcgtcgccaaggtcttttcatacagacatgggtac
agggccctgataacagttgagagcagaaaagatggtatactgtacgtttcaattccgaac
gttcccaagccggttaagttcgtctacgtgatgagggccctcggcctgctcagcgataag
gagatcgttgaggcaataagcgaggatccgaggatccagcaggttctattcaacaacctt
gaggatgcaagtgacataagaacccaggaagaggctctcgacttcataggaaggctttcc
ctccccggtcagcccaaagagtacagactcaggagggccgagcacataatagacaacaac
ctcctcccgcacatgggcgtcgagcccgagaacaggaaggccaaggcttactacctcggc
atgatggccctcaaggttcttgagctttcgctcggcctccgcggtgaggacgacaaggac
cactacgccaacaagaggctcaagctcgctggagacttgctcaaggatctcttccgcgtc
gccttcggccagctcgtcaaggatatgcagtaccagatgaccaagacctaccagagaaag
ggcgagcgctacaccttcgagaacatccagcgctttgtgaggaactccgttaggccggac
gttctgagcgagaggatcgagcacgccctcgcaactggttcttggcccggcggaagaacc
ggtgtgagtcagctcctcgacaggaccaactacatatcgaccctctcccacctaagacgc
gttacctccccgctcagcagggagcagcctcactttgaggcgagagatctgcacggaacc
cactggggcaggatatgtccgacggagactccggaaggtccaaactgtggtctggttaag
aacctcgccctgatgtcccagataaccactgggatcccggaggaggaggtcaaggagtac
atcctcaaactcggcgtcgttccaattgaagagagaagaccttcacccggactttatcgt
gtttacctcaacggtgttctcatcggaaccatagaggacggaaaagcccttgttcagact
ataaggtcggatagaagggcggggaagataagcgacgtgatcaacgttgccctctacgag
gagggggacgttagggagatctacatcaacagcgacgacggtagagttaggaggcccctc
atcatagtggagaacggcaggccaaagctcacccgcgagcacgttgaggctataaagaac
ggcacccttacctggagcgacctgataaggatgggcgtcatcgagtacctcgatgcggag
gaagaggagaacgcctacgtggcaacctggccctgggaggtcacggaggagcacacacac
cttgagttaatgcctgccgcaatactcggtattcccgcttcgctcgttccctacccggag
cacaacgcggccccgcgtaacacctacggcgcgggtatggccaagcagagcctcggtctc
ggctgggcaaacttcaggattcgcgttgatacaagaggtcacctcatgcactacccgcag
gttccgctcgtcaactcgcgcatcatgaaggccgttggtttcgaggagaggcctgccggt
cagaacttcgtcgtcgccgtactgagctatggcggttacaatatggaggatgccatcgta
ataaacaaggcatcgatcgagcgcggtctcgcgagatcaacctttttcagaacgtacgag
gcggaagagaagagatacctgggcggtcagatggatcgctttgaaaagccagatccgacc
atcaagggctaccttggcgatcggtactaccgcaacctcgacgaggacggcataatcttc
ccggagtcaaaggttgaaggaaaggacgttctcgtgggcagaacgtcaccaccgaggttc
cttgaggagcagagcggcctcgggggaatagccctccaggagaggagggagactagcgtt
gccgtcaggccgagcgagaagggtatagttgacaaggtgataataaccgagaccggtgac
ggtacgaaactcgtaaaggtcaccgttagagacctgcgcatccctgagttgggtgacaag
ttcgcgagcaggcacgggcagaagggtgttatcggcctcatagttccacaggaggatatg
ccctggaccgagaatggcatcgttcccgatctcatagtgaatcctcacggtatcccgagc
cgtatgaccgtcggacagctcatagaggccataggcggaaaggtcgcctcacttaaggga
aggagagttgacggtacggccttcatcggggagccggaagagaagctcaggaaggagctc
gaggagctcggcttcaagcacacgggcagggaggtcatgtacgacggtataaccggcagg
aggcttgaggcggacatattcatcggcgtcatctactaccagcgtctgcaccacatggtt
gccgacaagatgcacgcgcgctcaagaggcccggttcaggttctcaccaagcagccgacc
gagggaagggcgagagagggtggattgaggttcggtgagatggagcgtgacgtcctcgtt
ggacatggcgctgcgatgctcttgatcgagaggctcctggaggagagcgacaagacggag
gtatgggtctgtgaaaactgcggtcacatagcccttgaggacaagcgccgtggcaaggtc
tactgccccgtctgcggtgaggaggagaggataagcaaggtcgagatgagctacgcgttt
aaactgctcctcgacgagctgaaggcgatggtgattagaccttccctcaagttgaaggat
agggtgtga
DBGET
integrated database retrieval system
