Terrisporobacter glycolicus: L0P85_08220
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Entry
L0P85_08220 CDS
T08249
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tgc
Terrisporobacter glycolicus
Brite
KEGG Orthology (KO) [BR:
tgc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tgc03016
]
L0P85_08220
Enzymes [BR:
tgc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L0P85_08220
Transfer RNA biogenesis [BR:
tgc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L0P85_08220
Prokaryotic type
tRNA splicing ligases
L0P85_08220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Luciferase_N
DUF730
Motif
Other DBs
NCBI-ProteinID:
UPA32105
LinkDB
All DBs
Position
1660732..1661952
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AA seq
406 aa
AA seq
DB search
MIEVKGKYNWAKIFADKIDEKSREQIEELCNQEFVKNGKIRIMPDAHAGAGCVIGFTAKL
GDMVIPNIVGVDIGCGMFTVELGKIDFPLDELDNIINQYVPSGKNVHEGKKYNFTKLQDL
FCYRELKKSKWIERSIGTLGGGNHFIEVDEDKNKNKYLVIHSGSRNLGKQVAEYYQSLAI
ELCSGKEKFYEEKEELIKTFKAQGRRKEIQNELKKLIKKYEGLKPKYPKDLCFLSGKYRE
EYLHDMKICQEYAEINREVMANIILNKLINRSVDDFSHFHTTHNYINFKDNIIRKGSISS
YEGEKLLIPINMRDGSILAIGKGNEDWNFSAPHGAGRLMSRTEAKSKLNLNDFEKTMKDI
WTTSVCEETIDEAPMAYKPIEDILKFVGDTVDIIDVIKPIYNFKSK
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgatagaagtaaagggaaaatacaactgggctaaaatatttgctgataagattgatgaa
aaatcaagggaacaaatagaagagctttgtaaccaagaatttgttaaaaatgggaaaata
agaataatgccagatgctcatgcaggtgcaggatgcgttattggatttactgctaagctt
ggggacatggtcatacctaatatagtaggtgtggacattggatgtggaatgtttactgta
gaattaggaaaaatagattttcctttagatgagctagataatattattaatcaatatgta
ccttctggtaaaaatgttcacgaaggtaaaaaatataattttactaaattacaagattta
ttttgttatagagaattaaaaaaaagtaaatggatagaaagaagtataggtactttaggt
gggggaaaccactttatcgaagttgatgaagataagaacaaaaataaatacttagtaata
cattctggtagcagaaatttaggaaaacaagttgcagagtactatcaaagtttagcaata
gagttatgtagtggcaaagaaaagttttatgaagaaaaagaagaattaataaaaacattt
aaggcacaaggaagaagaaaagaaattcaaaatgaactgaaaaagttaataaaaaaatat
gaaggtttaaaacctaaatatcctaaagacttatgttttttaagtggaaaatatagagaa
gaatacttacatgacatgaaaatttgccaggagtacgctgaaataaatagagaagtcatg
gcaaatataattttaaataaattgataaatagaagtgttgatgattttagtcacttccat
acaactcacaattacataaattttaaagataatataataaggaagggaagcatatcatct
tatgaaggagaaaagctacttataccaataaatatgagagatggaagtatacttgccata
ggaaaagggaatgaagattggaacttctcagcaccccatggagcaggaagacttatgagc
agaacagaagcaaagtcaaagttaaatcttaatgactttgaaaaaactatgaaagatatt
tggaccacttctgtatgtgaagaaacaatagatgaagcgccaatggcatataaaccgata
gaggatattttaaagtttgttggtgatacagtagatataattgatgtaattaaaccaata
tataatttcaaatcaaaataa
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