Theropithecus gelada (gelada): 112612243
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Entry
112612243 CDS
T08041
Symbol
LIG1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tge
Theropithecus gelada (gelada)
Pathway
tge03030
DNA replication
tge03410
Base excision repair
tge03420
Nucleotide excision repair
tge03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112612243 (LIG1)
03410 Base excision repair
112612243 (LIG1)
03420 Nucleotide excision repair
112612243 (LIG1)
03430 Mismatch repair
112612243 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tge03032
]
112612243 (LIG1)
03400 DNA repair and recombination proteins [BR:
tge03400
]
112612243 (LIG1)
Enzymes [BR:
tge01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112612243 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
112612243 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112612243 (LIG1)
DNA replication proteins [BR:
tge03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112612243 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112612243 (LIG1)
DNA repair and recombination proteins [BR:
tge03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112612243 (LIG1)
NER (nucleotide excision repair)
Other NER factors
112612243 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
112612243 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DUF1685
Motif
Other DBs
NCBI-GeneID:
112612243
NCBI-ProteinID:
XP_025222314
Ensembl:
ENSTGEG00000024522
UniProt:
A0A8D2FZ26
LinkDB
All DBs
Position
19:complement(25232372..25284463)
Genome browser
AA seq
919 aa
AA seq
DB search
MQRSIMSFFHPKKEGKAKKPEKEASNGSRETEPPPKAALKEWNGVVSESDSPVKRPGRKA
ARVLGSEGEEEDEALSPAKGQKPAPDCSQVSPPRSATSPENNASLSDTSPRDSSPSGIPK
RRTARKQLPKRTIQEVLEEQSADEDREAKRKKEEEEVETPEESLTEAEVATEKEGEDRDQ
PTTPPKPLKTSEAETPTESVSEPEVATRQELQEEEEQTKPPRSAPKTLSSFFTPRKPAIK
KEVKEEEPGAPGKEGAAEGPLDPSGYNPAKNSYHPVEDACWKPGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLSLNHLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSAST
AKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPL
KPMLAHPTRGVSEVLKHFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAF
DLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDVEQIAEFLEQSVKDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
ASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVTPDHWLDPSA
VWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQ
SQIQNQQGEDSGSDPEDTY
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatcatgtcattcttccaccccaagaaagagggtaaagcgaagaagcct
gagaaggaggcatccaacggcagcagagagacggagccccctccgaaggcggcactgaag
gagtggaatggagtggtgtccgagagtgactctccagtgaagaggccaggcaggaaggcg
gcccgggtcctgggcagcgaaggggaagaggaggatgaagcccttagccctgctaaaggc
cagaagcctgccccggactgctcacaggtctccccgccccgttccgccacatctcctgaa
aacaacgcttccctctctgacacctctcccagggacagctccccatcagggatcccgaag
cgtcgcacagctcggaagcagctcccgaaacggaccattcaggaagtcctggaagagcag
agtgcggacgaggacagagaagccaaaaggaagaaggaggaggaagaagtggagacccca
gaagaaagcctcacagaggctgaagtggcaacagagaaggaaggagaagacagggaccag
cccaccacacctcccaagcccctaaagacctccgaagcagagaccccgacggaaagcgtt
tcggagcccgaggtggccacgaggcaggaactgcaggaggaggaagagcagaccaagcct
ccccgcagcgctcccaagacactcagcagcttcttcacgccccggaagccagcaatcaaa
aaagaagtgaaggaggaggagccaggggctccaggaaaggagggagctgctgagggaccc
ctggacccatctggttacaatcctgccaagaacagctaccatcccgtggaagacgcctgc
tggaaaccgggccagaaggtcccttacctggctgtggcccggacgtttgagaagatcgag
gaggtgtctgcccggctccggatggtggagacactgagcaacttgctgcgctccgtggtg
gccctgtcgcctccagacctcctcccggtcctctacctcagcctcaaccaccttgggcca
ccgcagcagggcctggagcttggcgtgggtgatggcgtccttctcaaggcagtggcccag
gccacaggtcggcagctggagtccgtccgggctgaggcagccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgccaccacctccgctcact
gcttccggggtcttcagcaagttccgtgacatcgccaggctcactggcagtgcttccaca
gccaagaagatagacatcatcaaaggcctctttgtggcctgccgccactcagaagcccgg
ttcatcgccaggtccctgagtggacggctacgccttgggctggcagagcagtcggtgctg
gccgccctctcccaggctgtgagcctcacgcccccaggccaagaattcccaccagccgtg
gtggatgctgggaagggcaagacagcagaggccagaaagacgtggctggaggagcaaggc
atgatcctgaagcagacattctgcgaggtgcccgacctggaccgaattatccccgtgctg
ctggagcatggcctggaacgtctcccggagcactgcaagctgagcccagggattcccctg
aaaccaatgttggcccatcccacgcggggcgtcagtgaggtcctgaaacacttcgaggag
gcagctttcacctgcgaatacaaatacgatgggcagagggcacagatccacgccctggaa
ggtggggaggtgaagatcttcagcaggaatcaggaagacaacactggaaagtacccggac
atcatcagccgcatccccaagattaaactcccatcggtcacatccttcatcctggacacc
gaagccgtagcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaagtggatgcgtccgagatccaggtgcaggtgtgtttgtacgccttc
gacctcatctacctcaatggagagtccctggtacgtgagcccctttcccggcgccggcag
ctgctccgggagaactttgtggagacggagggcgagtttgtcttcgccacctctctggac
accaaggatgtcgagcagatcgccgagttcctggagcagtcggtgaaagactcctgtgag
gggctgatggtgaagaccctggatgtcgatgccacctacgagatcgccaagagatcgcac
aactggctcaagctgaagaaggactaccttgatggcgtgggtgacaccctggacctggtg
gtgatcggcgcctacctgggccgggggaagcgggccggccggtacgggggcttcctgctg
gcctcctatgacgaggacagtgaggagctgcaggccatatgcaagcttggaactggcttc
agcgatgaggagctggaggagcatcaccagagcctcaaggccctggtgctgcccagcccc
cgcccttatgtgcggatagatggtgccgtgactcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgtgccgacctctccctctcccccatctaccctgctgcgcggggc
ctggtggatagtgacaaggggatctcccttcgcttccctcggtttattcgagtccgtgaa
gacaagcagccggagcaggccaccaccagtgcacaggtggcctgtttgtaccggaagcaa
agtcagattcagaaccaacaaggcgaggactcaggctctgaccctgaagatacctactaa
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