Theropithecus gelada (gelada): 112612427
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Entry
112612427 CDS
T08041
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tge
Theropithecus gelada (gelada)
Pathway
tge03013
Nucleocytoplasmic transport
tge03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tge00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112612427 (UPF1)
03015 mRNA surveillance pathway
112612427 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tge03019
]
112612427 (UPF1)
Enzymes [BR:
tge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
112612427 (UPF1)
5.6.2.5 RNA 5'-3' helicase
112612427 (UPF1)
Messenger RNA biogenesis [BR:
tge03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112612427 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
112612427 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
112612427
NCBI-ProteinID:
XP_025222720
Ensembl:
ENSTGEG00000014982
UniProt:
A0A8D2FDZ2
LinkDB
All DBs
Position
19:18423529..18462209
Genome browser
AA seq
1129 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNF
QVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLP
DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQ
LTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSS
ADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALS
AFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTE
AANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAF
QGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLL
NYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDR
SSQGRPSSMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRG
TPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQ
PGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctctcagactctcactttcctggacacggaggag
gccgagctgctcggcgccgatacacagggctccgagttcgagttcaccgactttactctt
cctagccagacgcagacgccccccggcggccccggcggcccgggcggtggcggcgcggga
ggcccaggcggcgcgggcgcgggcgccgcggcgggacaactcgacgcgcaggttgggccc
gaaggcatcctgcagaatggggctgtggacgacagtgtagccaagaccagccagttgttg
gccgagttgaacttcgaggaagatgaagaagacacctattacacgaaggatctccccata
cacgcctgcagttactgtggaatacacgatcctgcctgcgtggtttactgtaataccagc
aagaagtggttctgcaacggacgtggaaatacttctggcagccatattgtaaatcacctt
gtgagggcaaaatgcaaagaggtgaccctgcacaaggacgggcccctgggggagacagtc
ctggagtgctacaactgcggctgtcgcaatgtcttcctcctcggcttcatcccagccaaa
gctgactcggtggtggtgctgctgtgcaggcagccctgtgccagccagagcagcctcaag
gacatcaactgggacagctcacagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctccgagcaggagcagctgcgggcgcgccagatcacggcacaa
cagatcaacaagctggaggagctatggaaggaaaacccttctgccacgctggaggacctg
gagaagccgggggtggacgaggaaccgcagcacgtcctcctgcggtatgaggacgcctac
cagtaccagaacatattcgggcccctggtcaagctggaggccgactatgacaagaagctg
aaggagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcggtacaaaggggac
cttgcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggcgat
gagattgccattgagctgcggagcagcgtgggtgcacccgtggaggtgactcacaacttc
caggtggattttgtgtggaagtcgacctcctttgacaggatgcagagtgcattgaaaacg
tttgctgtggacgagacctcagtgtccggctacatctaccacaagctgctgggccacgag
gtggaggacgtaatcatcaagtgccagctgcccaagcgcttcacggcgcagggcctcccc
gacctcaaccactcccaggtttatgccgtgaagactgtgctgcaaagaccgctgagcctg
atccagggcccgccaggcacggggaagacagtgacgtcggccaccatcgtctaccacctg
gcccggcaaggcaacgggccggtgctggtgtgtgctccgagcaacatcgccgtggaccag
ctaacagagaagatccaccagacggggctgaaggtcgtgcgcctctgtgccaagagccgc
gaggccatcgactccccagtgtctttcctggccctgcacaaccagatcagaaacatggac
agcatgcctgagctgcagaagctgcagcagctgaaagatgagactggggagctgtcgtct
gccgacgagaagcggtaccgggccttgaagcgtaccgcggagagagagctgctgatgaat
gcagatgtcatctgctgcacatgtgtgggcgccggcgacccaagactggccaagatgcag
ttccgctccattttaatcgacgaaagcacccaggccactgagccagagtgcatggttccc
gtggtccttggggccaagcagctgatccttgtaggtgaccactgccaactgggcccagtg
gtgatgtgcaagaaggcggccaaagccgggctgtcgcagtcgctcttcgagcgcctggtg
gtgctgggcatccggcccatccgcctgcaggtccagtaccggatgcaccctgcactcagc
gccttcccgtctaacatcttctacgagggctccctccagaatggtgtcactgcagcggat
cgtgtgaagaagggatttgacttccagtggcctcagcccgataaaccgatgttcttctat
gtgacccagggccaagaggagatagccagctcgggcacctcctacctgaacaggaccgag
gctgcgaacgtggagaagatcaccacgaagttgctgaaggcgggcgccaagccggaccag
attggcatcatcacgccctacgagggccagcgctcctacctggtgcagtacatgcagttc
agcggctccctgcacaccaagctctaccaggaggtggagatcgccagtgtggacgccttt
cagggacgcgagaaggacttcattatcctgtcctgtgtgcgggccaacgagcaccaaggc
attgggtttttaaatgaccccaggcgtctgaatgtggccctgaccagagcaaggtacggc
gtcatcatcgtgggcaacccgaaggcgctgtcgaagcagccactctggaaccacctgctg
aactactataaggagcagaaggtgctggtggaggggccgctcaacaacctgcgcgagagc
ctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggagcccgcttc
atgaccacagccatgtatgatgcccgggaggccatcatcccaggctccgtctatgatcgg
agcagccagggccggccctccagcatgtacttccagacccatgaccagattggcatgatc
agtgccggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatg
ccgcccatgccaccgcctggctattttggacaagccaatgggcccgctgcaggccgaggc
accccgaaaggcaagactggccgtgggggacgccagaagaaccgctttgggcttcctggg
cccagccagaccaacctccccaacagccaagccagccaggatgtggcgtcacagcccttc
tctcagggcgccctgacgcagggctacatctccatgagccagccctcccagatgagccag
cccggcctctcccagccggagctgtcccaggacagttaccttggtgatgagtttaaatca
caaatcgacgtggcgctctcgcaggactccacgtaccagggagagagggcgtaccagcat
ggcggggtgacggggctgtcccagtactaa
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integrated database retrieval system
