Theropithecus gelada (gelada): 112619028
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Entry
112619028 CDS
T08041
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tge
Theropithecus gelada (gelada)
Pathway
tge03008
Ribosome biogenesis in eukaryotes
tge03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tge00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
112619028 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
112619028 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tge03019
]
112619028 (XRN1)
03009 Ribosome biogenesis [BR:
tge03009
]
112619028 (XRN1)
03016 Transfer RNA biogenesis [BR:
tge03016
]
112619028 (XRN1)
03036 Chromosome and associated proteins [BR:
tge03036
]
112619028 (XRN1)
Messenger RNA biogenesis [BR:
tge03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112619028 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
112619028 (XRN1)
Ribosome biogenesis [BR:
tge03009
]
Eukaryotic type
Pre-60S particles
RNases
112619028 (XRN1)
Transfer RNA biogenesis [BR:
tge03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
112619028 (XRN1)
Chromosome and associated proteins [BR:
tge03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112619028 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
112619028
NCBI-ProteinID:
XP_025232584
Ensembl:
ENSTGEG00000008753
LinkDB
All DBs
Position
2:149827207..149969004
Genome browser
AA seq
1706 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWAALDKNEGEMVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDIVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLRIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFVYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTIENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSENGNQKLTAIVKPQPAVHHYSS
NSSVSCGHLGGLNHSPQSLFVPTQVSTKDDDEFCNIWQSLQGSGKMQHFQPAVQEKGAVL
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEEGKSPKAECWSQKMSNKQPNSGIEN
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDRKNEMKQI
GNEIPVSSIRRDEYGLPSQPKQSKKLASYVNKPHSAHEYHNVQSMDNVCWPASSQIPPVS
TPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLIHGPQCHSENEAKEKAALF
ALQQLGTLGTNFPLPSPVFANYPSAVPPGTIPPVFPPPTGWDHYGSNYALGAANIMPSSS
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFEN
KEAQSSQATPVQTSQPDSSNIVKVSPQESSSASLKSSQIAQPASSFQVETASQGRSISHH
KSTPSSSSRRKSRKLAVNFGVSKPSE
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcagagcggtatccctgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcagtgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaatc
tttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagagaagggagaa
actcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttttctctcttaagagaagaagtccgatttggtggcaagaaaacacaacgggtatgtgct
ccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgattat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatggggtttcttgttggtaatgattttattcctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacgtatattaccatcctgccagaa
cttgggggttatataaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtagcagcagaagaa
gccaggaactacaaggaaaagaaaaaattaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggcgaaatggtaacttctaaggataatttagaagatgagact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggggttgacatagtatctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccttatcattatgcacctttcctatctgatatacgcaacatcagtacactcagaatc
cattttgaactaggaaaaccttttaagccgtttgaacagcttcttgctgtacttccagca
gccagcaaaaatttacttcctacatgctaccagcatttgatgaccagtgaagactcacca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagaca
tgtaaccactccctcaaaaaagaagagaggaaaagaaaccaacatagtgagtgcctaatg
tgctggtatgatagagacacagagtttgtctatccttctccatggccggaaaagttccct
gccatagaacggtgttgtacaaggtataaaataatatcgttagatgcttggcgtgtagac
ataaacaaaaacaaaataaccagagttgaccagaaggcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtggcgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtggatgcagaatcagatgaa
cttaccatagaaaatgtagcttcatcagtgctcggaaaatctgtctttgttaattggcct
caccttgaggaagctagagttgtggctgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttattcaggaagaactgccccaccatctaaagtggtt
catcttggagataaagaacagtctaactgggcaaaggaagtacaaggaatttcagaacat
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgac
tcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtcttt
atgctgggaactccctattatggctgcactggagaagtgcaggattcaggtgatgtgatt
acagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaaaaatgaggaggtacctggatataccaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttctggcagagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaatggtgctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtg
aagccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagtt
ggccttcgaggcaccatcataggaataaaaggagctaatagagaagctgatgtactgttt
gaagtattatttgatgaagaatttcctggagggttaacaataagatgctcgcctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaaat
ggaaatcagaagttgacagctattgtaaaaccacaaccagctgtgcatcactatagctca
aattcatcagtttcctgtgggcatttaggaggcctcaaccattcccctcaatcacttttt
gttcctactcaagtatctactaaagatgatgatgaattctgcaacatttggcagtcctta
cagggatctggaaagatgcaacactttcagccagctgtacaagagaagggtgcagtgcta
cctcaagaaataagccaagtaaaccaacatcataaatctggctttaatgacaacagtgtt
aaatatcagcaaagaaaacatgaccctcacagaaaatttaaagaagagggtaagagtcct
aaagctgagtgttggtcccaaaaaatgtccaataagcagcctaattctggaattgagaac
tttttagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggag
cctccaagtgaagagcatttgtcaccacaatcatttgccatgggaacacggatgcttaaa
gaaattctaaaaattgatggctctaacactgtggaccgtaagaatgaaatgaaacagatt
ggtaatgaaatccctgtttcctctattagaagagatgaatatggattaccctctcagcct
aaacaaagtaagaaattagcatcttatgtgaacaagcctcacagtgctcatgagtaccat
aatgttcagtctatggacaatgtgtgttggcctgcctccagccagatccctcctgtatcc
acaccagtaactgaactttctcgaatttgttcccttgttggaatgccacaacctgatttc
tcctttcttaggacaccgcagacaatgactgtttgccaagtaaaattatctaatggctta
ctgatacatgggccacagtgccactctgaaaatgaagccaaggagaaagctgcacttttt
gctttacaacaattgggcaccttaggcacgaatttccctttgccttcaccagtatttgca
aattatccttcagctgtgccacctggaaccattcctccagtctttcccccacctactggc
tgggatcactatggaagcaactatgcactgggggcagctaatataatgccttcatcatct
catctctttggctcaatgccatggggaccatcagtgccagttcctgggaagcccttccat
catactttatattctgggaccatgcccatggctgggggaatgccagggggtgtgcacaat
cagtttatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgagaat
aaggaagcccagagttctcaagccactccagttcagaccagccagccagattcttccaac
attgtcaaagtaagtccacaggagagctcatcagcttctttgaagtcctctcagattgct
caacctgcatcttcttttcaagttgaaacggcctctcagggccgtagtatatctcaccat
aagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtcaattttggt
gtttctaaaccttctgagtaa
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integrated database retrieval system
