Theropithecus gelada (gelada): 112620378
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Entry
112620378 CDS
T08041
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tge
Theropithecus gelada (gelada)
Pathway
tge04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tge00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
112620378 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tge04147
]
112620378 (COL18A1)
00535 Proteoglycans [BR:
tge00535
]
112620378 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
tge00536
]
112620378 (COL18A1)
Exosome [BR:
tge04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112620378 (COL18A1)
Proteoglycans [BR:
tge00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112620378 (COL18A1)
Glycosaminoglycan binding proteins [BR:
tge00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112620378 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
DUF1970
Motif
Other DBs
NCBI-GeneID:
112620378
NCBI-ProteinID:
XP_025234638
Ensembl:
ENSTGEG00000017987
UniProt:
A0A8D2FKL5
LinkDB
All DBs
Position
3:complement(17581353..17637640)
Genome browser
AA seq
1754 aa
AA seq
DB search
MAPDPSGCRVLLLLFCCLAAAQADLLNLNWLWFNNKDTSQAATTIPEPQGLLPVQPTADT
TTHVVPQDGSTEPATAPGSPEPPSELLEDSQGTPTSAESPDMPEENIAGVGAKILNVAQG
IRSFVQLWNDTVPTESLARAETRVVEAPVGTLALPGPSSTPRENGTTLWPSRGTPSSPGA
HTTEAGTLPAPTPSPPSLGRPRAPLTGPSVPPPSSGRASLSSSLGGAPAWGSLHDPDSQG
LSPTAATPSQQLQRPDVRLRTPLLHPLVTGSLGAHAAPSAFSSGLPGALSQVAVTTLIGD
SGAWVSHAANSVGLGLANNSALLGADPEAPAGRCLPLPPSLPVCGRLGISRSWLPNHLHH
ESSQQVQAAAQVWGGLLRTHCHPFLAWFFCLLLAPPCGRVPLPAPPPCRQFCEALQDTCW
SRLSGGRLPVACASLPTQEDGYCVFIGPAAESVGEEVGLLQLLGDPPPQQITQTDDPDVG
LAYVFGPEANSGQVARYHFPSLFFRDFSLLFHIQPATEGPGVLFAITDSAQAVVSLGVKL
SGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVEGGYVALYVDCEEFQR
MPLARSSRGLELEPGAGLFVAQAGGADPDKFQGMIAELKVRRDPQVGPMHCLDEEGDDSD
GASGDFGSGLADTRELLREEMGTALKPRLPTPPPVTAPPLAGGSSTEDSRSEEIEEQTTV
TSLGAQTLPGSDSVSTWDGSVQTPGGRVKEGGLKGQKGEPGIPGPPGREGPPGSPCLPGP
PGLPCPVSPLGPVGPALQPVPGPQGPPGLPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFP
GTPGDVGPKGDKGDPGVGARGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRG
PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGK
EGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGP
GLPAGFDDMEGSGGPFWSTARGADGPQGPPGLPGLKGDPGVPGLRGAKGEVGANGAPGFP
GLPGREGTAGLQGPKGDRGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGAVLSV
PGPEGRPGFAGFPGPAGPKGDLGSKGERGSPGPKGEKGEPGSVFSPDGSALGPAQKGAKG
EPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDAHLGFGMRGMPGPPGPP
GPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGTKGEVGPPGPPGQFPFDFLQLE
AEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPPGYPGIPGPKGESIRGQPG
PPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG
TSSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEPRTPLPRGTDN
EVAALQPPVVQLHDSNPYPRREFPHPTARPWRADDILASPPRLPEPQPYPGAPHHSSYVH
LRPALPTSPPAHTHRDFQPVLHLVALNSPLPGGMRGIRGADFQCFQQARAVGLVGTFRAF
LSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFAGSEGPLKPGARIFSFDGKDVL
RHPTWPQKSVWHGSDPSGRRLTESYCETWRTESPSVTGQASSLLGGRLLGQNAASCHHAY
IVLCIENSFMTASK
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcggctgccgcgtcctgctgctgctcttctgctgcctggcagct
gctcaggccgacctgctgaacctgaactggctttggttcaataataaggacaccagccaa
gcagctaccacaatccctgagccccaggggctcctgcctgtgcagcccacagcagacacc
accacgcacgtggtcccccaggatggttccacggagccagcgacagcccctggcagccct
gagccaccctcagagctgctggaggacagccagggtacccccacttctgccgagagcccg
gacatgccagaggagaacattgccggtgtgggagccaagatcctgaacgtggcccaaggc
atccggagctttgtccagctgtggaatgacaccgtccccactgagagcttggcccgggcg
gaaacgcgggttgttgaggctcctgtgggcaccctcgccctccctgggccttccagcacc
ccccgggagaatgggaccactctgtggcccagccgtggcactcccagctctccgggcgcc
cacacgaccgaggctggcaccctgcctgcacccaccccatcgcctccctccctgggcagg
ccccgggcaccactcacggggccctcagtgccaccaccatcctcaggtagagcttctctc
tcctcctcgctgggcggggcccctgcctggggaagcctgcacgacccggacagccaagga
ctctcgcctaccgcagccactcccagccagcagctccaacgccctgacgtccgcctgcgc
acaccacttctgcaccccctggtgacgggctccctgggtgcgcacgcggccccctctgcc
ttctcctctgggctcccgggtgcactgtctcaggtcgcagttaccactttaatcggggac
agcggtgcttgggtctcccacgcggctaactctgtggggctgggtcttgctaataactct
gccctgctcggggctgaccctgaggcccccgccggtcgctgcctgcccctgccgccctcc
ctgccggtctgtggccgcctgggcatctcgcgctcctggctgcccaatcacctccaccac
gagagcagccagcaggtgcaggccgcggcgcaggtgtgggggggcctgctgcggacgcac
tgccaccccttcctcgcctggttcttctgcctgctcctggccccaccgtgcggcagggtc
ccgctgcccgccccgccaccctgccgccaattctgcgaggccctgcaggacacgtgctgg
agccgcctgagtgggggccggctgcctgtcgcctgtgcctcgctcccaacccaggaggac
gggtactgtgtgttcattgggccggctgcagagagcgtcggcgaggaggtggggctgttg
cagctccttggggaccctccgccccagcaaatcacccagacggatgaccccgacgtcggg
ctggcctacgtctttgggccagaggccaatagcggccaagtggcccggtaccacttcccc
agcctcttcttccgcgacttctcactgctgttccacatccagccggccacggagggccca
ggggtgctgttcgccatcacggactcggcgcaggcagtggtctcgctgggcgtgaagctc
tctggggtgcaggacgggcaccaggacatctccctgctctacacggagccaggcgcaggc
cagacccacacagccgccagcttccggctccccgccttcgtcggccagtggacacactta
gcactcagtgtggagggtggctacgtggccctctacgtggactgtgaggagttccagaga
atgccgcttgctcggtcctcacggggtctggagctggagcccggcgccgggctcttcgtg
gctcaggcaggaggagcggaccctgacaagttccaggggatgatcgctgagctgaaggtg
cgcagggacccccaggtgggccccatgcactgcctggacgaggaaggcgatgactcagat
ggggcatctggagactttggcagtgggctcgccgacacccgggagcttctcagggaggag
atgggcacagccctaaaacccaggctccccacgccacccccggtcactgctccacccttg
gctggaggcagcagcacggaagattccagaagtgaagaaatcgaggagcagaccacagtg
acttcattaggagctcagacacttcctggctcagattctgtctccacgtgggacgggagt
gtccagacccctgggggccgcgtgaaagagggtggcctgaaggggcagaaaggggagcca
ggtattccaggcccgcctggccgggaaggccccccaggctccccctgcctgcctggtccc
ccgggtctcccgtgcccggtcagtcccctgggtcctgtaggcccagcgttgcaacctgtc
cccggaccacaaggacctccagggctgccagggagggacggcacccctggaagggatggc
gagccgggtgaccctggtgaagacggaaagccgggcgacaccgggccgcagggcttcccc
gggactccaggggatgtgggccccaagggtgacaagggagaccccggggttggagcgaga
ggacccccaggaccccaagggcctccggggcccccaggaccctccttcagacacgacaag
ctgaccttcattgacatggagggatctggcttcggtggtgatctggaggccctgcggggt
cctcgaggcttccccggaccccccggaccccctggtgtcccaggcctgcccggcgagcca
ggccgctttggggtgaacagttctgacgtcccaggacccgccggccttcctggtgtgcct
gggcgcgagggtccccccgggtttcccggcctcccgggacccccaggccctccaggaaaa
gaggggcccccaggaaggacggggcagaaaggcagcctgggtgaagcaggcgccccagga
cataaggggagcaagggagaccccggtcctgctggcgctcgcggggagagcggcctggca
ggagcccctggacccgctggaccaccaggcccccctgggccccctgggccaccaggacca
ggactccccgctggatttgatgacatggaaggctccggggggcccttctggtcaacagcc
cgaggcgccgatgggccgcagggaccccccggcctgccaggactgaagggggatcctggt
gtgcctggcctgcggggagccaagggagaagttggagcaaacggagcccccgggttcccc
ggcctccctggcagagagggcactgctgggctccaggggccaaagggagacagaggcagc
cagggagaaaagggagatccagggaaggacggagtcgggcagccaggcctccccggaccc
cccggacccccggggcctgtggtctacgtgtcggagcaggatggtgccgtcctgagcgtg
ccgggacctgagggccggccgggtttcgcaggctttcccggacctgcaggacccaagggc
gacctgggctctaagggtgaacgaggctccccgggacccaagggtgagaagggtgaaccg
ggcagcgtcttcagccccgacggcagtgccctgggccctgcccagaaaggagccaaggga
gagccgggcttccgaggacccccgggtccatacggacggccagggcacaagggagagatt
gggttccctggacggccgggtcgccccgggatgaacggattgaaaggagagaaaggggag
ccgggagatgcccaccttggatttggcatgaggggaatgcccggccccccagggcctcca
gggcccccaggccctccagggactcctgtttacgacagcaatgtgtttgctgagtccagc
cgccccgggcctccaggattgccagggaatcagggccctccaggacccaagggcaccaaa
ggagaagtgggcccccccggaccaccagggcagtttccatttgacttccttcagttggag
gctgaaatgaagggggagaagggagaccgaggtgatgcaggacagaaaggcgaaaggggt
gagcccgggggcggtggcttttttggctccagcctgccaggcccccccggtcccccaggc
ccacctggctaccctgggattccaggtcccaagggagagagcatccggggccagcctggc
ccacctggacctcagggaccccccggcatcggctacgaggggcgccagggccctcccggc
cccccaggcccccctggccccccagggcccccttcatttcccggccctcacaggcagact
atcagcgttcccggccctccgggcccccctgggccccctgggcctcctggaaccatgggc
acctcctcaggggtgaggctctgggccacgcgccaggccatgctgggccaggtgcacgag
gttcccgagggctggctcatcttcgtggccgagcaggaggagctctacgtccgtgtgcgg
aacgggttccggaaggtccagctggagccccggacgccacttccacgagggacggacaac
gaagtggctgccttgcagccccccgtggtgcagctgcacgacagcaacccctacccccgc
cgggagttcccccaccccaccgcaaggccctggcgggcagacgacatcctggccagcccc
cctcgcctgcccgagccccagccctaccctggagccccgcaccacagctcctacgtgcac
ctgcgtccggcgctccccacgagcccacccgcccacacccaccgcgacttccagcccgtg
ctccacctggttgcgctcaacagcccgctgccaggcggcatgcggggcatccgcggggcc
gacttccagtgcttccagcaggcacgggccgtggggctggtgggcaccttccgtgccttc
ctgtcctcgcggctgcaggacctgtacagcatcgtgcgccgtgccgaccgcgcagccgtg
cccatcgtcaacctcaaggatgagctgctgtttcccagctgggaggctttgttcgcaggc
tctgagggtccgctgaagcccggggcacgcatcttctcctttgacggcaaggacgtcctg
aggcaccccacctggccccagaagagcgtgtggcatggctcggaccctagtgggcgcagg
ctgactgagagctactgcgagacgtggcggacagagtctccctcagtcacaggtcaggcc
tcctccctgctggggggcaggctcctggggcagaatgccgcaagctgccaccacgcctat
atcgtcctctgcatcgagaacagcttcatgactgcctccaagtag
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