Thermococcus gorgonarius: A3K92_00480
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Entry
A3K92_00480 CDS
T05047
Name
(GenBank) RNA-binding protein
KO
K12589
exosome complex component RRP42
Organism
tgg
Thermococcus gorgonarius
Pathway
tgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3K92_00480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgg03019
]
A3K92_00480
Messenger RNA biogenesis [BR:
tgg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3K92_00480
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
A3K92_00480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ASJ00065
UniProt:
A0A2Z2M6V0
LinkDB
All DBs
Position
94518..95348
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AA seq
276 aa
AA seq
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MSDVEIMAGIMRDRILSLLKDGKRLDGRGFEDYRNIEIQTGVIEKAEGSALVKLGDTMVL
VGVKVDFGEPFPDLPERGVMTTNVELVPLASPTFEPGPPDERAIELARVVDRGIRESNAV
DLDKLVIVPGKLVYVLFIDVHVLDHDGNLIDATGLAAMAALMTTRIPKVQYNEETGELIK
LDEFEPLPINHVPIPVTFAKIGSSIVVDPNLDEETVMDSRLTITTDETGHISAVQKGEGG
AFKLEEVMYAVDTALKKASEIREILLNVTGFELPQA
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgttgaaataatggccggcatcatgcgcgacaggatactcagtctgctcaaa
gacggaaaaagactcgatggcaggggttttgaagactaccggaacatagagatccagacc
ggtgtcattgaaaaggcagagggctctgcattagttaagcttggagacacaatggtgctc
gttggcgttaaggtcgactttggggagcccttcccggatctgcccgagaggggagtaatg
acgactaacgtagagcttgttccactcgcttcaccgacctttgagccgggccctccagat
gagagggcaatcgagctggcccgcgttgtggacaggggaataagggagagcaacgccgtt
gacctcgacaagctggttatagtgcctggaaagctcgtttacgtcctcttcatcgatgtt
cacgtcctcgaccacgacggaaacttaatcgacgcaacaggattggcggcgatggctgcc
ctaatgaccaccagaattcccaaggttcagtataacgaggaaacaggagagctgataaag
ctggacgagtttgagcctctgccgattaatcacgtcccaattcccgtgaccttcgccaag
atcggctcttcaatagttgttgatcccaacctggacgaggagaccgtcatggacagcagg
ctgactataacgactgacgagaccggtcacatctccgccgttcagaagggagaaggcggt
gcctttaagcttgaagaggtcatgtacgctgttgataccgccctcaagaaggcctcagaa
attcgtgaaatcctgctcaatgtcacggggttcgagctcccccaggcgtga
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