Thermococcus gorgonarius: A3K92_01170
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Entry
A3K92_01170 CDS
T05047
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tgg
Thermococcus gorgonarius
Pathway
tgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3K92_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgg03019
]
A3K92_01170
03009 Ribosome biogenesis [BR:
tgg03009
]
A3K92_01170
Enzymes [BR:
tgg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3K92_01170
Messenger RNA biogenesis [BR:
tgg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3K92_01170
Ribosome biogenesis [BR:
tgg03009
]
Prokaryotic type
rRNA helicases
A3K92_01170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASJ00191
UniProt:
A0A2Z2MCA6
LinkDB
All DBs
Position
complement(196751..197962)
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AA seq
403 aa
AA seq
DB search
MSFEKLGLSEATLVAVRKKGFSKPTDIQREVIPLLMSGKRDLIGQSQTGTGKTAAFALPI
IETVDPKVKSVQAMIITPTRELALQVADEIKSLRGEKRIYVYAIYGGQPIGPQIKALSKG
VHVIVGTPGRILDHIRRGTLKLDDVKFFVLDEADRMLDMGFQEDIEAIFKELPEEKKTLM
FSATMPMDVLLLAKKYMKDPEIVIVSRDELVPGEVEQEYVEVPRGRKYRVLKEILKEDFY
GIIFCQTKRETRELESRLRGDGYQAEALNGDMSQAARERTFRRFKEGRTKILVATDVAAR
GLDVTGITHVINYSIPMNSEQYIHRIGRTGRMGKKGKAVTLLQPGEFRRFRYIAKQAGVE
VRKSKISTDLIPSYRDPFRNEELEREYRQRWGRKKNHRRQSSF
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaaattaggtttatccgaggccacgttagtggcggttaggaaaaaaggt
tttagcaaaccaacggacattcaaagggaagttataccccttctgatgtccgggaagagg
gatttaataggccaatcccagactggaaccggaaaaactgccgcctttgccctccccata
atcgagaccgttgatccaaaagttaaatccgttcaggcaatgataatcacgcctaccaga
gaacttgccctccaagtcgcggatgaaatcaaaagtctccggggagagaagaggatttac
gtttatgctatttatggaggccagccaatagggccacagataaaggccctcagcaaagga
gttcacgtcatcgtcggcactccagggagaatacttgaccatataagacgcggtactctt
aaactggacgatgtgaagttttttgtccttgacgaggcggacagaatgctcgatatgggc
tttcaggaggacatcgaagccatcttcaaagaactacccgaagaaaagaaaacgctcatg
ttctcggccactatgccgatggacgttcttcttctagccaagaaatacatgaaggatccg
gagatagtcatagtaagcagagatgagcttgttccaggggaagttgagcaggaatacgtg
gaagtacccaggggaagaaagtacagagtactgaaggaaattcttaaggaagatttctac
gggataatcttctgccagaccaagagagaaaccagggaacttgaaagcagactgagggga
gatggttatcaagcagaggcccttaacggggacatgagccaagcggccagagaaaggacg
tttagaaggttcaaagagggaagaaccaagatactggtcgctactgacgttgccgccaga
ggtctagacgtaactggaatcacccacgttattaactactccattccaatgaactcagaa
cagtatatccacaggataggacgaactggaagaatggggaaaaaaggcaaagcagtaacc
cttctccagccaggagaatttagaagattcagatacatagccaaacaggcaggagtagag
gtcaggaagtcaaagataagcacagatttaatcccatcctacagagacccgttcaggaac
gaagagcttgaaagagagtaccgacaaaggtggggaagaaaaaagaatcatagaagacaa
agctctttttga
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