Thermococcus gorgonarius: A3K92_03830
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Entry
A3K92_03830 CDS
T05047
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tgg
Thermococcus gorgonarius
Brite
KEGG Orthology (KO) [BR:
tgg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tgg03016
]
A3K92_03830
Enzymes [BR:
tgg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A3K92_03830
Transfer RNA biogenesis [BR:
tgg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A3K92_03830
Prokaryotic type
tRNA splicing ligases
A3K92_03830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASJ00664
UniProt:
A0A2Z2M9U8
LinkDB
All DBs
Position
675121..676560
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AA seq
479 aa
AA seq
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MVPLKRIDKIRWEIPKFDKRMRVPGRVYADDALIEKMRQDRTLEQAANVAMLPGIYKYSI
VMPDGHQGYGFPIGGVAAFDVKEGVISPGGVGYDINCGVRLIRTNLREQEVRPRIKELVD
TLFKNVPSGLGSQGRVKLHWTQLDDVLADGAKWAVENGYGWEEDLEHLEEGGRMEGADPE
AVSQKAKQRGAPQLGSLGSGNHFLEVQVVDKIFNEEIAKAYGLFEGQVVVMVHTGSRGLG
HQVASDYLRVMEKANRKYGIPWPDRELVSVPFQSEEGQRYFSAMKAAANFAWANRQMITH
WVRESFEEVFKRKAEDMEMHVVYDVAHNIAKVEEHEVDGRKVKVVVHRKGATRAFPAGHP
DVPRAYRNVGQPVLIPGSMGTASYVLAGAEGSMKETFGSTCHGAGRLLSRKAATRQYRGD
RLRNELMQRGIYVRAASLRVVAEEAPGAYKSVDNVVNVVHEAGIANLVARMRPMGVAKG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggtgccgctgaagaggatagacaaaatcaggtgggagataccgaagttcgacaagaga
atgcgcgttccgggaagggtttacgctgacgacgcgctcatagagaagatgcgccaagac
aggacgcttgagcaggcggcaaacgttgcaatgctcccgggcatttacaagtactccatc
gtaatgccggacggacatcagggctacggcttcccaatcggtggagtggcggcctttgac
gtaaaggaaggtgtaataagccccggaggggtgggctatgacatcaactgtggagtacgg
ctaatccgaacaaatttacgtgagcaagaagtaagacctcgcatcaaggagctcgtcgac
actctcttcaagaacgtgccaagtggcctgggaagccagggcagggtgaagctccactgg
acacagctggacgatgtcttagctgacggtgcaaagtgggccgtcgagaacggctacggc
tgggaggaggaccttgagcacctcgaagaaggcggaaggatggagggggcggacccagag
gcagtaagccagaaggcgaagcagaggggcgctccccagctcggctccctcggttcagga
aaccacttcctagaggttcaggtggtcgacaagatattcaacgaggagattgccaaagcc
tacggcctctttgagggccaggtcgtggttatggtccacactggcagcagaggccttggc
caccaggtggcgagcgactacctcagggtaatggagaaggccaacaggaagtacggaatt
ccgtggcccgaccgcgaactggtaagcgtccccttccagagcgaggaggggcagagatac
ttcagcgcaatgaaggcagctgcaaacttcgcctgggccaacaggcagatgattacccac
tgggtcagggagagcttcgaggaggtcttcaagaggaaagccgaggacatggagatgcac
gtagtctacgatgtggcgcacaacatagcgaaggtcgaggaacacgaggttgacggtagg
aaggtcaaggtcgtcgtccacaggaaaggtgcaacgagggccttcccggcaggccacccg
gacgttcccagagcgtaccgcaacgtcggtcagcctgtattaattccaggctcgatggga
acggcaagctacgtccttgctggggccgaaggctcgatgaaggaaacctttggctcgacc
tgtcacggtgctggaaggctcctcagcaggaaggcagcaacgagacagtaccgcggcgac
aggctcaggaacgagctaatgcagagaggaatctatgtcagagcagcttcgctgagggtt
gtggcggaagaagctcccggagcctacaagagcgttgacaacgtcgtcaacgttgttcac
gaggctggaatagcgaacctcgtcgctaggatgaggccaatgggtgtcgctaaaggctga
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