Thermococcus gorgonarius: A3K92_05540
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Entry
A3K92_05540 CDS
T05047
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
tgg
Thermococcus gorgonarius
Pathway
tgg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3K92_05540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgg03019
]
A3K92_05540
Messenger RNA biogenesis [BR:
tgg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3K92_05540
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3K92_05540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
Auto_anti-p27
OB_RRP5_4th
A2L_zn_ribbon
DZR
HVO_2753_ZBP
Zn_ribbon_3
Rrp40_N
FtrD-like
Zn_ribbon_IS1595
Zn_ribbon_NOB1
Zn_Tnp_IS91
zf-C3HC4
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ASJ00978
UniProt:
A0A2Z2MGA8
LinkDB
All DBs
Position
989148..989735
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AA seq
195 aa
AA seq
DB search
MEVKKTPKEGDLVLPGDHLGVIEEYLPGEGVKEENGELIATRAGRVRIDKEKMEIHVEPV
TDIPPLPKVGDIVLAQVIDVKPQAVIAHLLRIEGEGGREIATSKLAGIHVSQIKNGFVED
ISNEFKIGDIVRARVISNEKSPIQLTTKDPDLGVVYAFCSKCRTPLIRRGDKLICPKCGN
VETRKLSRLYRKLVI
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggaggttaaaaagacaccaaaagaaggcgatttagtgctccccggggatcacctggga
gttattgaagagtatctcccgggtgagggcgtgaaagaagaaaacggcgagttaatagct
acaagagcaggaagggttagaatagataaggagaaaatggaaatccacgtcgagcccgtg
acggatataccaccccttccaaaagttggggacatagttctggcacaggtcattgatgtt
aagccccaggcggttatagcccatcttcttagaatagagggagaaggcggaagagaaatc
gctacttcaaaactggccggaatccatgtctcccagatcaaaaacggttttgtcgaggac
ataagcaacgagttcaaaataggcgatatagtccgcgctagggtaatctctaacgaaaag
agcccaattcagcttactacaaaagatccagacttgggagtagtttacgcattctgctcc
aaatgcagaacgcctctcataagaagaggggacaaactgatctgccccaagtgcggaaac
gttgaaacaagaaagctctcaaggctctaccgcaagctggtgatctga
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