Tunturiibacter gelidiferens: RBB81_03410
Help
Entry
RBB81_03410 CDS
T10211
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tgi Tunturiibacter gelidiferens
Pathway
tgi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBB81_03410 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgi03400
]
RBB81_03410 (mfd)
Enzymes [BR:
tgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBB81_03410 (mfd)
DNA repair and recombination proteins [BR:
tgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RBB81_03410 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
AHSA1
Motif
Other DBs
NCBI-ProteinID:
XCB22982
UniProt:
A0AAU7Z250
LinkDB
All DBs
Position
727249..730989
Genome browser
AA seq
1246 aa
AA seq
DB search
MVLPFVRELLADLEHSEAFERVRRHLSGGTGRRRVSGLTFTARALYLPFFVRAAQAPCVI
IVADNKAAEALQAAVISACELTGALPPESVLSLPAHDVLPFENLSPHPEIQETRAATLWK
ISQHATNQARLVIAPVEAACMRLFPRDYYRALTLHLKIGEEYMPDMLVEHLLSVGYAKVD
VVEMPGQVTLRGGILDVYSPEIDRPVRIDFFGDEIESIRRFDPDTQRSASTLDSALLLPL
TETPVTDKLLTAINARLTRAGKAGAVLEGGEEPAELLTHVSTRTGEATIFPGWEFFAPVA
GANLTLLDLLSASSPTAPRVFLEEPAMIKNQGERWWNKIEQRHERSGIGNLVRPEDIYLS
PWDLDDRLHKFPGIELDQLGAVDILDADRSDLSEVDFATRPTMRFHGSIPAMIDAINALI
KQEARILLTAPNQGEVERLAGLLQEYQLPYRLGSRNESPGSSTVYTESSYLGGNTIDLRI
PVIVKTPIAAGVQILDLDKATARQIVIFGAQDLTDDADVTTRPVRRGKSKAAAFISDFRD
LAVGDYVVHVEHGIARYCGLRVIEENDAPPLELMILEFADEAKLYVPLTRLDLIQKYRSS
ETGPPPELNKLGTQAWQKTKARVKKAMADMTAELLKLYAQRQAAVGTPFSPDTNMQHEFE
DAFDFNETDDQLTAIADIKADMESTRPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAV
LTPTTVLSFQHFESFKKRFANFPVNIEMISRFRTAKEKKIILEKAEAGKIDILIGTHAVL
SKDLKFQDLGLLVVDEEQRFGVRHKERLKQMRAAIDVLSMSATPIPRTLHMSLIGLRDMS
VIETPPKDRMAIQTIVAKFDEKLIRTAIEMELERGGQIYFVHNRVETIYDLASKIRELVP
QARIVIGHGQLPEAELERVMLAFMNHEYDVLVATSIIENGLDIPLANTIIINRADRHGLS
ELYQLRGRVGRSNRRAYSYLLIPPETELTEIARRRLAALKEFSDLGAGFKIAALDLELRG
AGNMLGGEQSGHIEAIGFEMYTTMLEEAVRKMKGEEEKPAHANTVINLGISVRIDSDYIP
EENQRLRMYKRIAGAQTQADLADVRAELQDRYGTPPETVLNLLAAGEIRLHCEQLGISQL
DRKRTQVELPNPKGNSARGSAKAQPIKTFVEMLHVKFAAVNADPSHFTNGNNKTVDPATL
MKLVSRNTKRGAQFTPQGTLRWPLPSAKSEEVLSETRALLDSLTTT
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggttcttcccttcgtccgcgagctcctcgcagacttggagcattctgaagcttttgag
cgtgtacgccgccacctcagcggaggcacggggcgcagacgtgtctccggactcaccttc
accgcacgcgccctctaccttcccttcttcgtccgcgccgcgcaagccccctgcgtcatc
atcgtcgccgacaacaaagccgctgaagccctccaggccgccgtcatcagcgcctgcgag
ctcaccggcgccctgccgcccgaatccgtcctcagcctccctgcgcacgacgtcctcccc
ttcgaaaatctctccccccaccccgagatccaggagacccgcgccgccaccctctggaaa
atcagccagcacgcgaccaaccaggcccgcctcgtcatcgcacccgtcgaagccgcctgc
atgcgtctcttcccccgcgactactaccgcgccctcaccctccatctcaagattggcgaa
gagtacatgcccgacatgctcgtcgagcacctcctctccgtcggctacgccaaagtcgac
gtcgtcgagatgcccggtcaggtcaccctccgcggcggcatcctcgacgtctactccccc
gagatcgaccgccccgtccgcatcgacttcttcggcgacgagatcgaatccatccgccgc
ttcgaccccgacacccagcgctccgcctccaccctcgacagcgcactcctcctccctctc
accgaaactcccgtcaccgacaagctcctcacggccatcaacgcccgcctcacccgcgca
ggcaaagccggagccgtcctcgaaggcggcgaagagcccgccgaactcctaacccacgtc
agcacccgcaccggagaggccaccatcttccccggctgggagttcttcgcccccgtagcc
ggcgccaacctcaccctcctcgacctcctcagcgcctccagccccaccgccccccgcgtc
ttcctcgaagagcccgccatgatcaaaaatcagggcgaacgctggtggaacaagatcgaa
cagcgacacgagcgctccggcatcggcaacctcgtccgtcccgaagacatctacctctct
ccctgggacctcgacgaccgcctccacaagttccccggcatcgaactcgaccagctaggc
gcagtcgacatcctcgacgccgaccgcagcgacctctccgaagtcgacttcgccacccgc
cccaccatgcgctttcacggctccatcccagccatgatcgacgccatcaacgccctcatc
aaacaggaagcccgcatcctcctcaccgcccccaatcaaggcgaagtcgagcgcctcgcc
ggcctcctgcaggagtaccagctcccctaccgcctcggctcccgcaacgagagccccggc
agctccaccgtctacaccgagtccagctacctcggcggaaacaccatcgaccttcgcatc
cctgtcatcgtcaaaacccccatcgccgctggcgtccagatccttgatctagataaagcc
accgcccgccagatcgtcatcttcggcgcacaagacctcaccgacgatgcggacgtcacc
acccgccccgtccgtcgcggcaaatccaaggccgccgccttcatctccgacttccgcgac
ctcgccgtcggcgactacgtcgtccacgtagaacacggcatcgcccgctactgcggcctg
cgcgtcatcgaagagaacgacgccccgccactcgagctcatgatcctcgagttcgccgac
gaagccaagctctacgtccccctcacgcgcctcgacttaatccagaagtaccgctccagc
gagaccggcccaccgccggagttaaacaaactaggcacgcaagcctggcagaagaccaaa
gcccgcgtaaagaaggcgatggccgacatgaccgccgagctgctcaagctctacgcgcag
cgtcaggccgccgttggcacgcccttctcccccgacaccaacatgcagcacgagttcgaa
gacgccttcgacttcaacgagaccgacgaccaactgaccgccatcgccgacatcaaggct
gacatggagtccactcgccccatggaccgcctcctctgcggcgacgtaggctacggcaaa
accgaagtagccatgcgcgccgccttcaaagccgtgcaggactccaaacaagtagcagtc
ctcacccccaccaccgtgctcagcttccagcacttcgagtccttcaaaaaacgcttcgcc
aacttccccgtcaacatcgagatgatctcccgcttccgaaccgccaaagagaaaaagatc
atcctcgaaaaagccgaagccggcaagatcgacatcctcatcggcacccatgccgtcctc
tccaaagacttaaagttccaggacctcggcctcctcgtagtcgatgaagaacagcgcttc
ggcgtccgccacaaagaacgcctcaagcagatgcgtgccgccatcgacgtcctctccatg
tccgcgacgcccatcccacgcaccctgcatatgtcactgatcgggttacgtgatatgtcc
gtcatcgaaaccccacccaaagaccgcatggccatccagaccatcgtcgccaagttcgac
gaaaagctcatccgcaccgcaatcgagatggagctcgagcgcggcggccagatctacttc
gtccacaaccgtgtagaaaccatctacgaccttgcctcaaagattcgcgaattagtcccg
caagcccgcatcgtcatcggccacggccagctccccgaagccgaactcgagcgcgtcatg
ctcgccttcatgaaccacgagtacgacgtcctcgtcgccaccagcatcatcgaaaacggc
ctcgacatccccctcgccaacaccatcatcatcaaccgcgccgaccgccacggcctctcc
gagctctaccagctgcgcggccgcgtaggccgaagcaaccgccgcgcctattcctactta
ctcattccacccgaaactgagctaaccgaaatcgcccgccgccgcctcgccgcactcaaa
gagttctccgacctcggcgcaggcttcaaaatagccgccctcgacctcgagctacgcggt
gcaggcaatatgctcggcggcgagcaatccggtcacatcgaagccatcggcttcgagatg
tacaccaccatgctcgaagaggccgtccgcaagatgaagggcgaagaagaaaaacccgcc
cacgccaacaccgtcatcaacctcggcatctccgtccgcatcgacagcgactacatcccc
gaagagaaccagcgcctccgcatgtataagcgcatcgccggcgcgcaaacgcaagccgac
ctcgccgacgtccgcgccgaactgcaggaccgctacggcacaccacccgagaccgtcctc
aacctcttagccgcaggcgagatccgcctccactgcgaacaactcggcatctctcaactc
gaccgcaagcgcacgcaagtcgaactccccaaccccaaaggcaacagcgcccgcggctca
gcaaaagcccagcccatcaaaaccttcgtagagatgctccacgtcaaattcgccgccgtc
aacgccgacccctcgcacttcaccaacggcaacaacaaaaccgtagaccctgccacgctg
atgaaactcgtaagtcgcaacaccaaacgtggagcccagttcaccccacaaggcacctta
cgctggcccctcccctccgcgaaatccgaggaagtcctcagcgaaacccgcgccctcctc
gactctctcaccaccacctag
DBGET
integrated database retrieval system
