Tunturiibacter gelidiferens: RBB81_20360
Help
Entry
RBB81_20360 CDS
T10211
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tgi Tunturiibacter gelidiferens
Pathway
tgi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tgi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBB81_20360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgi03021
]
RBB81_20360 (rpoC)
03400 DNA repair and recombination proteins [BR:
tgi03400
]
RBB81_20360 (rpoC)
Enzymes [BR:
tgi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBB81_20360 (rpoC)
Transcription machinery [BR:
tgi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBB81_20360 (rpoC)
DNA repair and recombination proteins [BR:
tgi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBB81_20360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF7489
Motif
Other DBs
NCBI-ProteinID:
XCB21915
UniProt:
A0AAU7Z072
LinkDB
All DBs
Position
complement(4758080..4762270)
Genome browser
AA seq
1396 aa
AA seq
DB search
MFRSSPFELTGPIADFDAIKIQLASPEKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPITDWECLCGKYKRMKHRGVICDKCGVEVTLSKVRRERLGHIELASPCSHVWFFKGLP
SRIGHLLDISLRELEAVLYFESYVVVDPGDAPVKEREVIKDETKFRELDQQYRPSGFKAM
MGAEAIKELLKRVEVTELAIELRERMKTETSLQKKLKYSKRLKIVEAFRKSDNLPQWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMDLHAPEVIVRNEKRML
QEAVDALFDNGRRGRVLRGANNRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYHRLEQTGHCTTIKQAKEMVEMQEPIVWDILEEVIKDH
PVLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIE
ASVLMLASHNILSPASGQPITVPTQDLVLGLYYLTKAKVNAKGEGRVFANIEEVFMALEA
KQVETLTPIRLRYTGPVLDMTTAYDDQDLTHTEPVEFNKQYINTTVGRAILNDALPEGMP
YVNGLLKKKGIGQLINYCYLNLGLEVTVKTLDRVKDLGFTYATRSGLSVGLDDMVIPDSK
YTVVGDAEKQVLAMQQQYLDGAITNGERSNKVIQMWSGVTERVADEMFNNMKRADKEGAM
NPIYIMADSGARGSKQQIRQLSGMRGLMAKPSGEIIETPITANFREGLTVLQYFISTHGA
RKGLADTALKTADSGYLTRRLVDVAQDVIISHNDCGTVEGIYVTPIIEAGETIEPLRDRI
IGRVSLEKLKDFEGKTIVDINQEIDEDLASAVQAAGIERVKIRSVLTCESKRGVCILCYG
RNLGSGKMVEMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTASRVSDASHLEAKNVGTVRF
INLVTVRSKDGGLVAFNRNGSLAIVDEKGREKERYAVVYGAKLKVEEGQQVVQGTRLGEW
DPYTFSLLTEIAGTVQFKDLQEGLTLNEEVDEVTGLSRLVVTDSSDEKRQPAIIIKSAQG
NKRYLMPSRAHLMVADGDEIFPGDILAKIPRETTRTKDITGGLPRVVELFEARKPRDPAI
ISKIDGVVRFGEVSKGQRKVYVTADNGQEEEYSVPRGTYVNVQEGERLRAGDALIDGPRN
PHDILEVLGERALQQYLVNEIQEVYRLQGVTISDKHIETIVRQMLRWVKIEEVGDTTFLV
DQQTDRFRFNAENQRVLMSGGKPAIGRSLLLGITKASLSTDSFISAASFQETTRVLTEAS
INGSIDTLRGLKENVIVGRLIPAGTGMEYYRNVQLSPELEEAAAQVQQEVASAIEAEERE
LEQMRMEGEQEELAAE
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgctccagcccctttgaactgaccggacccatcgccgacttcgacgccatcaag
atccagctcgccagccctgagaagatccgcagctggtcgcacggcgaggtcaccaagccg
gaaaccatcaactaccgtaccttcaagcccgagcgcgacggcctcttctgcgcccgcatc
ttcggacccatcaccgactgggagtgcctctgcggcaagtacaagcgcatgaagcaccgc
ggcgtcatctgcgacaagtgcggcgtcgaagtcactctctcgaaggttcgccgcgagcgc
ctcggacacatcgagctcgccagcccctgctcgcacgtctggttcttcaagggcttgccc
tcgcgcatcggccacctgctcgacatcagcctgcgtgagctcgaggccgtcctctacttc
gagtcctacgtcgtcgtcgatccaggcgatgcgcccgtaaaagagcgcgaagtcatcaag
gacgagaccaagttccgcgagctcgatcagcagtaccgtccctccggcttcaaggccatg
atgggcgcagaagccatcaaggagctcctcaagcgcgttgaagtcaccgagctcgccatc
gagctgcgcgagcgcatgaagaccgagacctcgctgcagaagaagctcaagtactccaag
cggctcaagatcgttgaggccttccgcaagtccgacaacctgccgcagtggatgatcctc
gacgtgatccccgtgatcccgcccgagcttcgccccctcgttccgctcgacggcggccgc
ttcgccacgtccgacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctc
aagaagctgatggacctccacgcacctgaggtcatcgtccggaacgagaagcgcatgttg
caggaagccgtcgacgctctcttcgacaacggtcgtcgtggtcgcgttctccgcggcgcg
aacaaccgtccgcttaagtcgctctccgacaccctcaagggtaagcagggccgcttccgt
cagaacctcctcggcaagcgcgtcgactactctggccgttcggtcatcgtcgtcggcccc
gagctgaagctgcaccagtgcggtcttcccaagaagatggcgctcgagctcttcaagccc
ttcatctatcaccgcctcgagcagaccggccactgcaccaccatcaagcaggccaaagag
atggtcgaaatgcaggagccaatcgtctgggacatcctcgaagaggtcatcaaggatcac
ccggttcttctgaaccgcgccccgacgcttcaccgtctcggcatccaggctttcgagccc
gtactcgttgaaggtaaggcgatcaagatccatccgctcgtctgcactgccttcaacgcg
gacttcgacggcgaccagatggccgttcacatcccgctctcccctgaggctcagatcgaa
gccagcgtactcatgctcgcttcgcataacatcttgtccccagcctctgggcaaccgatc
acagtcccgacccaggacctcgtcctcggcctctactacctcaccaaggcgaaggttaac
gccaagggtgaaggccgcgtcttcgccaacatcgaagaggtcttcatggccctcgaagcg
aagcaggtcgagaccctcaccccgattcgtctgcgctacaccggccctgtccttgacatg
accaccgcgtacgacgatcaggacctcacccacaccgagccggtcgagttcaacaagcag
tacatcaacacgaccgtcggccgcgccatcctcaacgatgcgctccccgagggcatgcct
tacgtcaacggcctgctcaagaagaagggtatcggccagctcatcaactactgctacctg
aacctcggcctcgaagtcaccgtcaagactctcgaccgcgtcaaggacctcggcttcacc
tatgccacgcgctccggcctctctgtgggcttggacgacatggtcatccccgactccaag
tacaccgtcgtgggcgatgccgaaaagcaggttctcgccatgcagcagcagtacctcgac
ggagccatcaccaacggtgagcgctccaacaaggtcatccagatgtggtcgggagtcacc
gagcgcgtcgccgacgagatgttcaacaacatgaagcgtgccgacaaggaaggagccatg
aacccgatctacatcatggccgactccggtgctcgtggatccaaacagcagatccgccag
ctctccggcatgcgtggtttgatggccaagccctccggcgaaatcatcgaaacccccatc
acggcgaacttccgcgaaggcctcaccgtgctgcagtacttcatctcgacccacggcgca
cgtaagggcctcgccgacaccgcactcaagaccgcagactcgggttacctcacccgccgt
ctggtcgacgttgcgcaggatgtcattatctcgcacaacgactgcggcaccgtcgaaggc
atctacgtcacccccatcatcgaagccggcgagaccatcgagcccctgcgcgaccgcatc
atcggccgcgtctcgctcgagaagctcaaggacttcgagggcaagaccatcgtcgacatc
aaccaggagatcgacgaagatctcgccagcgccgttcaggccgcgggtatcgagcgcgtc
aagattcgctcggttctcacctgcgaatccaagcgcggcgtctgcatcctctgctacggc
cgtaacctcggctccggcaagatggtcgagatgggcgaagccgtcggcgtcatcgcggcg
cagtccatcggcgagcccggcactcagctcaccatgcgtaccttccacatcggcggtacg
gcatcacgcgtatccgacgcctcgcacctcgaggccaagaacgtcggcaccgtgcgcttc
atcaacctcgtcaccgttcgctccaaggacggcggcctggtcgccttcaaccgcaacggt
tcgctcgccatcgtcgacgagaagggccgcgagaaggagcgttacgctgtcgtctacggt
gccaagctcaaggtcgaagagggccagcaggtcgtccagggcacgcgcctcggcgagtgg
gatccctacaccttctccctcctcaccgagatcgccggaaccgtccagttcaaggacctc
caggaaggcctcaccctcaacgaagaagtcgacgaagtcaccggcctcagccgtcttgtc
gtcaccgactcctccgatgagaagcgtcagcccgcgatcatcatcaagtccgctcagggc
aacaagcgttacctcatgccttcacgcgctcacctcatggtggccgacggcgacgagatc
ttccccggcgacatccttgccaagatcccacgcgaaacaacgcgtaccaaggacattacc
ggcggtctcccacgcgtcgtcgaactcttcgaggcccgcaagccccgcgatccggcgatc
atcagcaagatcgatggtgtcgttcgcttcggcgaagtctccaagggtcagcgcaaggtc
tacgtcaccgcggacaacggtcaggaagaggagtacagcgttccccgcggtacgtacgtc
aacgtgcaggaaggcgaacgcctccgtgccggtgatgcactcatcgacggtccccgcaac
ccgcacgacattctggaagttctcggcgagcgcgcactccagcagtacctcgtcaacgaa
atccaggaagtctaccggctccagggcgtcaccatctccgacaagcacatcgaaaccatc
gttcgtcagatgcttcgctgggtcaagatcgaagaagtcggtgacaccaccttcctcgtc
gatcagcagaccgaccgcttccgcttcaacgccgagaaccagcgcgtgttgatgtccggc
ggcaagcctgccatcggccgttcgctcctcctcggcatcaccaaggcgtcgctctcgacc
gacagcttcatctcggccgccagcttccaggagaccacccgcgtactcactgaagccagc
atcaacggctccatcgacacgctccgtggcctcaaggaaaacgtcatcgtaggccgcctc
atccccgccggaaccggcatggagtactaccgcaacgtccagctctcaccagaactggaa
gaagcggcagcccaggtccagcaggaagtggcatccgccatcgaagccgaagagcgcgaa
ctggagcagatgcgcatggaaggcgaacaagaagaactagccgccgagtag
DBGET
integrated database retrieval system
