Toxoplasma gondii: TGME49_202750
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Entry
TGME49_202750 CDS
T01093
Name
(RefSeq) 3' exoribonuclease family, domain 1 domain-containing protein
KO
K12589
exosome complex component RRP42
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_202750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_202750
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TGME49_202750
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
TGME49_202750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
7897497
NCBI-ProteinID:
XP_018637385
UniProt:
S8F984
LinkDB
All DBs
Position
VIIa:join(3057043..3057351,3057697..3057758,3058332..3058518,3059034..3059104,3059832..3059915,3060277..3060337,3061000..3061158,3062196..3062315)
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AA seq
350 aa
AA seq
DB search
MAAASSFSSSGSSSLSSSASSASSASSASSASSATGAAACRGRGLLCGAELLYLEEGVAC
NVREDGRACVEVRPSQVETFALPKCSASAIVRSSENTVLCGVSMQLARPTAAPDEGEVFL
TVDCSAALGVGGVGGGVALESFGLGEGSSNSSLQALLSDMVLSAVDKKKLCLVPGKLIWR
VFVDCMVLKAGGCLLDAVSLAVHAALRTTVLPCVFVDEEEGEEGDGALGQISIQCDEREA
AGECFPVEDIPIIVTVGEIANRYVWDMTSNEESACVCRLLVAVSPRGHKCVGVQKLGASL
IDISTLPTVMVNSQRVCREIFERLERQIASQKTKKNSQQLSAFMRSMADL
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcttcttctttctcttcttccggctcgtcgtctttgtcttcctctgcgtct
tctgcctcttctgcgtcttctgcctcttctgcgtcttctgcaacgggggcggcggcttgc
cgcggcagaggactgctgtgcggggccgagctgctttatctggaggagggcgttgcctgc
aacgttcgcgaagacggccgtgcatgcgtcgaagtccggcccagccaagtggaaacgttc
gctctcccaaaatgctccgcgtctgcgattgtccgaagcagcgaaaacaccgttctctgc
ggcgtctcgatgcagctggcgcgccccacagcggctcctgatgagggcgaagtttttctc
actgtggactgctccgcggccttgggcgtcggcggagttggaggcggcgtcgcgttggaa
tcctttgggctcggcgaaggcagctccaacagcagcctccaggcgctcctgtcggacatg
gttctctctgcagtggacaagaagaagctctgcttggtgccggggaaactcatctggaga
gtcttcgtcgactgcatggtgctcaaggccgggggctgtttgctcgacgccgtgagtctc
gctgtccatgcagctcttcggacgaccgtgttgccatgtgtgttcgtggacgaagaagaa
ggcgaggaaggcgatggcgccttgggtcagatttctatccagtgtgacgaaagagaggcg
gccggcgagtgtttccccgtggaggacatccccatcatcgtcacagttggcgagattgca
aatcggtatgtatgggacatgaccagcaacgaagagtctgcgtgcgtctgtcggcttctc
gtcgcggtctctccccgcggtcacaaatgcgtcggcgttcaaaaactcggagcttctctc
attgacatatccactcttccgactgtcatggtgaactcacagcgcgtatgtcgggagatt
ttcgagcgcctcgagagacaaattgcgtctcaaaaaacgaagaaaaatagtcagcagctt
tcagctttcatgcggagtatggcggacctctga
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