Toxoplasma gondii: TGME49_203610
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Entry
TGME49_203610 CDS
T01093
Name
(RefSeq) 3'-5' exoribonuclease csl4, putative
KO
K07573
exosome complex component CSL4
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_203610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_203610
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TGME49_203610
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TGME49_203610
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
ECR1_N_2
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
7894303
NCBI-ProteinID:
XP_002367643
UniProt:
S8F921
LinkDB
All DBs
Position
VIIa:join(2401178..2401546,2402039..2402125,2402491..2402579,2402773..2402857,2403576..2403724,2404387..2404417)
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AA seq
269 aa
AA seq
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MEANVPSLQHSGMPLLPPGLQGRNSQQGSLLSARGSGTVAPENPTWEGTSAGRVQASPAK
PVSSRSVRTPGERLSSTSEYACGRGTYVKDDFIYAAVVGIEQIDHPTPRGQPTTIEGRGG
QKRAGGLPVLSVVPFAKSASVLPTTGCFVLAQVAKVARHRVECSILAVDGHTLAEPFRGF
IRSQDIRETDVDSVDVLECFKPGDVVRAKVISMGDGRCYVLSTASAELGVLFAQGKEGGQ
LQPVTCTLMRCDITGRLQKRKVAAPVLLS
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgaacgtcccgtcgcttcagcattcagggatgcccctcttgccgccggggctc
cagggacgcaactctcagcagggtagccttctgtctgctagaggatcaggcacggtggca
ccggaaaatccaacgtgggagggaacatctgcgggtcgcgtgcaggcgtcaccagccaag
cccgtgtcgtccaggagtgtgcggacgcctggtgagcgtctcagcagtacatcagagtat
gcatgtggtagaggaacctacgttaaggacgatttcatttatgccgccgttgttggaatc
gaacagatcgaccatccgactccccgtgggcaaccgaccaccatcgagggaagaggtgga
caaaaacgggcgggtggactccccgtgctttccgttgttccctttgcgaagtctgcgtcc
gtcctccccacaacagggtgtttcgtccttgctcaggtcgccaaagtagctcgccaccgc
gttgagtgttccattctcgccgtcgatggacatactttagcggagccgttccgcgggttc
atccggtcgcaggatatccgggaaactgatgtggactccgtcgacgttctggaatgtttt
aagccgggggatgtcgttcgagcaaaggtcatctcaatgggagatggccgctgctacgtg
ctctcgacggcctcggcagagcttggcgtgctcttcgctcaaggcaaggagggcggtcaa
ctgcagcctgtcacgtgcacgctcatgcgttgcgatattactgggcgtcttcagaaaaga
aaggtggccgctccagttttgctttcgtaa
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