KEGG   Toxoplasma gondii: TGME49_213770
Entry
TGME49_213770     CDS       T01093                                 
Name
(RefSeq) Superkiller viralicidic activity 2 family 2, putative
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
tgo  Toxoplasma gondii
Pathway
tgo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TGME49_213770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgo03019]
    TGME49_213770
   03041 Spliceosome [BR:tgo03041]
    TGME49_213770
   03009 Ribosome biogenesis [BR:tgo03009]
    TGME49_213770
   03016 Transfer RNA biogenesis [BR:tgo03016]
    TGME49_213770
Enzymes [BR:tgo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     TGME49_213770
Messenger RNA biogenesis [BR:tgo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     TGME49_213770
Spliceosome [BR:tgo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    TGME49_213770
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    TGME49_213770
Ribosome biogenesis [BR:tgo03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    TGME49_213770
Transfer RNA biogenesis [BR:tgo03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    TGME49_213770
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C DEXQc_Suv3 XRCC4_C
Other DBs
NCBI-GeneID: 7898946
NCBI-ProteinID: XP_002371114
UniProt: S8GRQ6
LinkDB
Position
V:complement(join(1297718..1298112,1298952..1299198,1299820..1299990,1300358..1300423,1300807..1300944,1301646..1301852,1302601..1302771,1303102..1303236,1303828..1304003,1304447..1304627,1305060..1305155,1305909..1306166,1306757..1307275,1308226..1309086))
AA seq 1206 aa
MADAVDDLFAVFGGGDSSSSLGSSVESPNIAVGPGGESASACRETDSEIENACCQVERKR
VRAAPQEANGAQTTSAPANVASPDEGASAVAPERKRRRREARRDNTEDAEDAEEGRDEEG
KKTALVVKLLASDKNCLHELVRPADCETAFHYFPFETTLPEYRQQADAPTLDKEDGRRGE
ASTEATDAGDAQAADGEEEQQARREGSAGEASAAATEREKKEGRKEPARQYKFRLDAFQQ
RSVLCLEAGESVLVAAHTSAGKTVVAEYAIAMSIRDKQRVVYTSPIKALSNQKYRDLSES
FGAENVGLMTGDVTLHPNASIMVMTTEILRSMLYRGSHLVNELKWLIFDEIHYMRDRERG
VVWEESIVLVPSTMRFVFLSATIPNAREFAEWVATIKHQPCHVLYTDYRPTPLQHYMFPA
GGEGVYLVMDEKKVFREDNFHTAVATLHKTVEEQAMETKQRRGRGRNRSSIEKLILMCHT
RQYTPVIIFCFSKRECEANATALLGSGSRNAGGNVDLTTEEEKQLIEEIFNNALETLEEE
DRHLPQVKSILPLLKRGIGIHHGGLLPFVKEMIEILFQESLLRVLFSTETFSMGVNMPAK
TVIFTAIRKYDGQEYRIVNSGEYIQMAGRAGRRGLDDRGIVIIMFDEQVDPEEAKQLFMG
QGAPLISTFHLGFNMLLNLFRIEDANPAFMISRSFAHFQRNRKALHLEKEKEELEEEVKK
VKDIHALADVDEADRPSFDVEAAVREYYELKHDLSGLGKELRDLAMQEKYILRYLQAGRI
VRLVDESGTDWGWATCLSKISKRCVPSTNAVRDGPTEQLVVDCLVACTPESIRETHGQGA
TGAVAASEKPQPAKSVNGGVEKKDYVLAVVSFTISCIRSISKCRMTLPVGVDVRSEDARR
SLHFQLKKVEKRFEPEGGIPLLDPIQEMKIPEPRLPELVAAIAEKEKRLTQNPLYEHPLC
GTYYDAHHRRVQLQTKLRILRESLDSQKQLVMKDTLRAMRRVLRQLDFLDANDVVTVKGR
VACEITTADELVAAELLFQNVFETMEVEAICALLSCLVFQEKHDEPEPKEEVLLTCLEKV
KEVAKNIAAVCVESRYIDPVGSSATKPSENSASPCTQTVDDYVNKFQHAIMSLTYRWAKG
EKFADVLSGTSIYEGTVIRCLRRLEELMRQMACASKSIGNPDLEKKFLEGIKKIRRGIVF
SSSLYL
NT seq 3621 nt   +upstreamnt  +downstreamnt
atggcggacgcagtggacgacttgttcgccgtcttcggcggcggagactcttcttcgtct
ctcggttcttctgtggagtctccgaatattgcagttggcccggggggcgagtctgcctct
gcatgtcgggagaccgactccgagattgaaaacgcatgctgtcaggtggagaggaagcga
gttcgcgctgcgccgcaagaagcgaatggagcgcagacaacgtctgctcccgcgaacgtc
gcctctccagacgaaggcgcctccgccgtcgcacccgagcgcaagcgcagacggagagaa
gcgagaagagacaacaccgaggacgcggaggacgcggaggagggcagagacgaagaagga
aagaagacggccttggtggtgaagttgctcgcttccgacaagaactgtctccacgagctg
gttcggcctgcagactgcgagaccgcgttccactacttccccttcgaaacgacgttgccg
gagtatcgacagcaagcagacgctccaacactcgacaaggaagacgggagacgcggcgag
gcctcgacggaggctaccgacgcaggcgacgctcaggccgcggacggggaggaggagcaa
caagcgcggcgcgaaggatccgcaggagaggccagcgccgcggcgacggaacgcgagaag
aaagaaggcagaaaagagcctgcgcgacaatacaaattccggctagacgccttccagcaa
aggagcgttctctgcctggaagcgggagaaagcgtcttggtcgcggctcacacctccgct
ggcaaaactgtcgtggctgagtatgcgattgcgatgagcattcgcgacaagcaacgcgtc
gtctacacaagccccatcaaagcgttgtccaaccagaagtaccgggacttgtccgagagc
ttcggcgccgaaaacgtcggcctgatgacgggtgacgtgacgctgcatccgaacgcctcg
atcatggtgatgacgacggagattctgcgctcaatgctgtaccgcggctcgcacctggtc
aacgaactgaaatggctgatcttcgacgagatccactacatgcgggaccgggagagaggc
gtcgtctgggaggagagcattgtcctcgttccctcgaccatgcgcttcgtcttcctctct
gcaacgattccgaacgcgagagagttcgcagaatgggtcgccaccatcaaacaccagcct
tgccatgtcctctacaccgactaccggccgacgcctctgcagcattacatgttccccgcg
ggtggcgagggggtctacctcgtcatggacgagaagaaagtcttccgcgaagacaacttc
cacacagctgtcgcgacgctgcacaaaacggtcgaggaacaagctatggagaccaaacag
cgacgcgggcgaggccgcaaccgctcgagcatcgagaagttgattctgatgtgtcacacg
cgccagtacactcccgtgattattttctgcttctccaagagagagtgtgaagcaaacgcg
acggcgctgctgggcagcggaagtcgaaacgctggaggcaacgttgaccttacgactgag
gaagaaaaacagttgatcgaagaaatcttcaacaacgctcttgagacgctcgaagaggaa
gaccgccacctcccgcaagtaaagtcgattttacctctgctgaaacgcggcatcggaatt
caccacggcggactcctgccgttcgtcaaagaaatgatagaaattctcttccaggagtct
ctgcttcgcgtactcttcagcacagaaacgttcagcatgggagtgaacatgcctgcgaaa
acagttattttcactgccattcgaaaatacgacggtcaagaatatcggattgtcaactct
ggagagtacattcaaatggcgggtcgcgcaggtcgtcgcggccttgacgaccgaggaatc
gtgatcatcatgttcgacgagcaagtggatcctgaggaggcgaagcagcttttcatgggc
cagggcgccccactcatctccaccttccacctcggcttcaacatgcttttaaatctcttc
cgcatcgaggacgcgaatccggccttcatgatttctcggtcgtttgcgcattttcagaga
aacaggaaggctctgcatttggagaaggagaaggaagaacttgaggaggaggtgaagaaa
gtaaaggacatccacgcgcttgcggacgtagacgaagccgacagaccttccttcgatgtc
gaggcggctgtacgggagtactacgagttgaagcacgacctctcgggattggggaaggag
ctccgagatctggccatgcaagaaaaatatattttgcgctacctgcaagcgggccgcatc
gttcgccttgtagacgagagcggcaccgactggggatgggcaacgtgtctgagcaaaatt
tcgaagcgctgtgtgccttcgacgaacgcagtgagggatggacccacggagcagctcgtg
gtagactgtctggttgcttgcacaccagagagcatccgagagacccatggacaaggcgcg
acgggcgccgtcgcggcctctgagaagccgcagcctgcaaaaagcgtcaacggaggcgtc
gagaagaaagactacgtcctcgcggttgtttctttcacgatttcatgcattcgcagcatt
agcaagtgccggatgaccctccctgtgggtgtcgacgttcgctccgaagacgcgcgtcgt
tctcttcatttccagctcaagaaggtcgagaagagattcgagccggaaggaggcattcca
cttctggatccgatccaagaaatgaaaattccggagccgcgtctcccagaattagtggct
gcgattgcggagaaggagaagcggttaacgcagaatcctctctacgaacacccactatgt
gggacatactacgacgctcaccaccggcgcgtccagttgcagacgaaacttcgaattctt
cgagagtctctggacagccaaaaacaacttgttatgaaggacaccttgagagcgatgcga
cgcgtgctgcggcaactggacttcctcgacgccaacgacgtggtgactgtgaagggtcga
gttgcatgcgaaatcaccactgccgacgagttggtggctgccgaattgcttttccaaaac
gtcttcgaaacgatggaagtcgaggcgatctgcgcacttctaagttgcctcgttttccaa
gaaaaacacgacgaaccagaacccaaagaagaggtccttctcacttgtttggagaaggtg
aaggaagtggcaaagaacattgcggcggtgtgcgtggaaagtcgatacattgaccccgta
gggtcttcggcgacgaagccgtcggagaattccgcctctccgtgcacgcagacagtggac
gattacgtgaataaattccagcatgcaattatgtcgcttacgtaccggtgggcaaaaggc
gagaaattcgccgatgtcctcagcggcacctcgatctacgaaggaaccgtcattcgctgt
cttcgtagactggaagaactcatgcggcaaatggcctgtgcctccaagtcgattggaaac
cccgaccttgaaaaaaagtttttggagggaatcaagaagatccgtcgcgggattgtcttt
tcatcctccctctatttgtag

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