Toxoplasma gondii: TGME49_216860
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Entry
TGME49_216860 CDS
T01093
Symbol
DDX39
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide DDX39
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03013
Nucleocytoplasmic transport
tgo03015
mRNA surveillance pathway
tgo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TGME49_216860 (DDX39)
09122 Translation
03013 Nucleocytoplasmic transport
TGME49_216860 (DDX39)
03015 mRNA surveillance pathway
TGME49_216860 (DDX39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_216860 (DDX39)
03041 Spliceosome [BR:
tgo03041
]
TGME49_216860 (DDX39)
Enzymes [BR:
tgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TGME49_216860 (DDX39)
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TGME49_216860 (DDX39)
Spliceosome [BR:
tgo03041
]
Complex C
Other components
EJC/TREX
TGME49_216860 (DDX39)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TGME49_216860 (DDX39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
7898510
NCBI-ProteinID:
XP_002370994
UniProt:
A0A125YNR2
LinkDB
All DBs
Position
XI:join(5844665..5844736,5845788..5845855,5846192..5846322,5846614..5847343,5847839..5847957,5848571..5848755)
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AA seq
434 aa
AA seq
DB search
MTTLEQNPADELVDYEEDEQNDAKEKGVEDVVVGRGNYVSIHASGFRDFFLKPELLRAIG
DAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNLDTSGEEGNTQGV
VCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLKDAKTTPHILIGT
PGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKKQVMFFSATMN
KEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNRKLNDLLDTLEFNQVII
FVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMVATDLFGRGID
IERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQDDTNVLNDVQTRFEVHIA
EMPQSIDASQYINQ
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacgactctcgagcagaaccccgcagacgaactggtcgattatgaggaagatgagcaa
aatgatgccaaggagaagggagtcgaggacgtcgttgtcggccgcggaaactacgtttcc
atccacgcttctggcttcagggatttctttttgaagcccgaacttctgcgcgcaattgga
gacgccggtttcgagcatccgtcggaagttcagcatgaaaccattcctcacgccatcaca
ggtgtcgatgttctgtgccaggccaaatccggaatgggtaaaaccgccgtgttcgtgctg
agcatcctccaacagctgaacctggacacaagtggcgaggaaggcaacacgcagggcgtt
gtgtgtttggggattgcccacactcgtgagctcgcgtttcagatcaagaacgagttcgac
cgcttcagcaaatacctgaagaacgtcaagtgcgaggtggtgtacggaggcatttcgatc
cagaagaacatcgacatgttgaaggatgcgaagacgacgccgcacattttgatcgggacc
ccgggccgtgttttggcgctgatcaagggcaagcacctgaacgccgagaaggtggcgcac
tttgtgttggacgagtgcgacaagtgcttggagaaactcgacatgcgcaaagacgtccag
aacatcttcatggcgacgcccaagaagaagcaagtcatgttcttctccgccacgatgaac
aaggagatccgcgacgtctgcaagcgcttcatgcagagccctgtcgaagtcttcatcgac
gacgagagcaagctcacgcttcacgggctcctccagtactacgtcaaactccaggagtcg
gagaaaaacagaaaactgaacgacctactcgacactctcgagtttaaccaggtcatcatc
ttcgtcaaaagcgtctcccgcgcgcaggctctcgaccgcctcctcacagagtgcaacttc
ccctccatcgccatccacgcgggtctggaccaggaggaacgtatcaacaggtatcagcag
ttcaagaacttcgagaagagaatcatggttgcgacagacctgttcggacgaggtatcgat
attgagcgcgtgaatattgttatcaactacgacatgccagactcgagcgactcttaccta
catcgagtgggtcgggctggccgcttcggaacgaagggcttagcaatcaccttcgtggct
agccaggacgacacgaatgtgttgaacgatgtccagactcgattcgaggtccacatcgcc
gagatgccgcagagcatcgacgcctcgcagtacatcaatcagtaa
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