Toxoplasma gondii: TGME49_225260
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Entry
TGME49_225260 CDS
T01093
Symbol
POLR2A, RPB1
Name
(RefSeq) DNA-directed RNA polymerase II RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03020
RNA polymerase
tgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TGME49_225260 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
TGME49_225260 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tgo03021
]
TGME49_225260 (POLR2A)
03400 DNA repair and recombination proteins [BR:
tgo03400
]
TGME49_225260 (POLR2A)
Enzymes [BR:
tgo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TGME49_225260 (POLR2A)
Transcription machinery [BR:
tgo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TGME49_225260 (POLR2A)
DNA repair and recombination proteins [BR:
tgo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TGME49_225260 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
OM45
Motif
Other DBs
NCBI-GeneID:
7895119
NCBI-ProteinID:
XP_002366199
UniProt:
S8EXC5
LinkDB
All DBs
Position
X:join(2363000..2363989,2364198..2364291,2364554..2364725,2365289..2365628,2366518..2367237,2367486..2367751,2368136..2368772,2369451..2369726,2370380..2370880,2371455..2372856,2373172..2373330,2373734..2373855)
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AA seq
1892 aa
AA seq
DB search
MSSLSSSAALYSSAPLKRVDQLQFGVFSSEQLRKMSVCEVTTSELYEHGMPKANGLNDLR
LGTLDYRQQCRTCNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDR
RDPKMQHILKIRSPSRRLKHVLDACAGRKRCEGYLPLPADGMPVPLAEEGEGGCGCVQPR
YFKEGPNIMVLFPDNREEGDEDVTEDIRRIFAAEEAYAVLRRISEEDLKMMGFDPERAHP
ASFILSTLPIPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQGDSVPGAVLQEMV
MLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI
TGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPGAKYVIRDDGSRF
DLRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLS
VTSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSK
FTRRDTFLTKPMVYNLLLQIPYWSGVVPPPAILHPVPLWTGKQLFSLLLFFDSSVSGGNT
KTRINMQRDVGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLW
LEAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLI
RLAHRGRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGS
TINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELF
FHAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMS
GEFVEDQTVELMTLDNEKLKRLYRHDVDQESYGKGWLSDELRNEILTDYELQQPLEEEFE
AIREDKNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPSGDSSRKQSPIEIARKVNELL
NEKLVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVE
RHFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQ
VKTPSLTVYLQDEIAMDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWV
RDYYEFPDDDELPSNLGRWLLRIQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDD
NSDDLVLRIRLKQQPGEGEDEDKDEDDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYM
REEARTIYNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEA
VRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFE
ETVEILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLKDASHNLDGLGGA
GEFDGGVGTSPTSSDPLVITPDGSFTPSPHLNSVFSPMPFSTVYSSFAASPANPLSPTTL
GTNAGVDTQQLGGKFSPTQQTPRSPTSPLSPLSCFSPRNPLSPLSPSGPPGGVFSPTSPI
LGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDGRGRGGSYSPTSPTLSP
SYSPSAPPSYSPTSPAYSPTSALSIASPVPGVGGDGRTPLSPFSPSNNPMSPHFSASTSY
SPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGAGQGPLSPS
FTVQSPRYSPSSPAAYSPTSPMPNVAGSPSYEDSHAPGGDTYSPTSPMYEANDPFSPDPF
AAEVVDEVGDVAALESPTEDTLGPNQGRGGSA
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctttgtcgtcgtccgcggcgctgtactcgtcggcgccgctgaagcgggtggac
cagctccagttcggcgtgttttcgtcggagcagcttcgcaagatgtctgtgtgcgaagtg
acgacgtccgagctgtacgaacacggcatgccgaaggccaacggcctgaatgacttgcgt
ctcggcacgctcgactaccgccagcagtgccggacctgcaacatggacgtgaagaactgt
ccggggcatttcggccacctgaacctcgtgaagccggtctaccactacggtttcctcggc
gcggttctccgcgtcctgcgctgtgtctgctacgcctgcggcaagctcctcgtagaccga
cgtgacccgaagatgcaacacatcttgaagatccgctcaccgtctcgtcggctgaagcac
gtcctcgacgcctgcgccggccgaaaaaggtgcgagggttacctgccgctgcccgcggac
ggcatgcctgtgccgcttgcagaggagggcgaggggggctgcggctgtgtccagccgcgc
tactttaaagagggtccaaacatcatggtcctctttccggataaccgcgaggaaggcgac
gaggatgtcaccgaggacatcaggcgcatcttcgcggcggaggaggcgtacgcggtgctc
cgccgcatttctgaagaggacctcaagatgatgggcttcgaccccgagagagcgcaccct
gcgtcgttcatactctccaccctgcccatcccgccgctcgctgtgcggccttccgtgcag
tacggcagcgcgcgaagcgaagacgacttgacgctgaagctcgtcgacatcgtcaaaacc
aacttgtcgctcaagagacagggggacagcgtccccggcgccgtcctccaagaaatggtc
atgcttctccagtaccacgtcaccacgcttttcgacaacgacattccaggcatgcctgtt
gccaccaccaggggaaagaaaccgattaagtccattcgcgcccggctaaagggcaaagaa
ggacgacttcgtggaaacctcatgggaaagcgtgtcgatttttcggcgcgtactgtcatc
acgggtgaccccatgcttccgatcgacactgtgggcgtgcccaagagcattgccatgact
cttacctatcccgagttcgtcacaccgctcaacatcggccagctgagacaacttgtgaaa
accggcccttttgactggccgggggcgaaatacgtcattcgagatgacggcagcagattt
gatttgcgccacgcgaagaagggcggcgaagtcgtcttggaggttggctaccgtgtcgag
cgccacatgcgggatggagactttgtgctgttcaatcgacagccgtcgcttcacaaaatg
tcgatcatgggccaccaggtgaagattcttccgtactcgacctttcgtctcaacctgtct
gtcacgtctccctacaacgccgacttcgatggagatgaaatgaacttgcacttagcgcag
agcgaagaaacgcgcgccgaaatcaagcacttgatgaaggttccgaaacagatcgtttcg
ccgcagggaaacaagcccgtcatggggattgtgcaggactcgttgttggctgtaagcaag
tttacgcgtcgagacacgttcttgacgaagccgatggtgtacaaccttctgctccagatt
ccgtactggagcggcgtggtcccgcctccagcaattctgcaccccgtgccgctgtggact
ggcaagcagttgttttctctgctgctgttcttcgactcgtctgtgtcgggcgggaacacg
aaaacgcgcatcaacatgcagcgcgatgtgggtgcgggtttggtggaccggaagaaagag
aacttgtttttgagtgaacgcgacgagcgcgtgatcattcgccagggcgagttgctcgcg
gggaagatctgcaaaaagatcgtcggctcggccagcggctctctcatccacctactctgg
ctcgaggcgggccctgagaggacgaaggacttcctctcgacgctccagaagctgaccaac
tactggctgcttcatcaaggcttcaccgtggggtgcaaagacatcattgcaaatgaggag
acaaacgagaaggtgcgagacatattggaccaggccaagaaggaagtcgacaaactgatt
cgcctcgcccaccgcggccgcctcgagtctcagcctggaaaaagcttgcgcgaaagtttc
gaggcgagagtgaacaaggaactgaacagcgcgcgcgaacgcagtggaaaagtcgctgca
gaaagcctcgacgagtccaacaacatcatggcgatggtgctcgctggatcgaaaggaagc
accatcaacatttcgcagatcatggcttgtgtcggccagcagaacgtggaggggaagcga
attcccttcggcttcaatgaacgttctctgccacacttccacaaattcgattactccccc
caaagtcgcggcttcgtcgaaaacagctacctctctggactagagcctcatgaactcttc
ttccacgctatgggtggtcgcgaaggtatcatcgatacagcctgcaaaacgtccgagaca
gggtacattcagcgtcggttgatgaaggcgatggaagacgtaatggtttactacgaccga
acagtgcggaattcgatttgcgaagtgcttcagttcctgtacggagaagacgggatgagt
ggcgaattcgtggaggaccagacggtcgagttgatgacgctcgacaacgagaagctgaag
cggctgtacagacatgacgtcgaccaggagagctacgggaaagggtggctgtctgacgag
ttgcgaaacgagattttgacggattacgagttgcagcaacctctcgaggaagagttcgaa
gccatccgcgaggacaagaaccgtctgtgtcgtcacatcttcaaggacggggagaccaaa
caacacattccgatcaacattctccgcctcctcgagtttgcgaaggcgcagtttcctagc
ggggacagctcgaggaagcagagcccgattgagatcgcccgcaaagtgaatgaactgttg
aatgagaaactcgtagtggttaagcagacgacgaacgcagacgccatctccgcagaagtt
caggaaaatgccaccatcttcatgaaggcgcacttgaggactgtcctcaactcccggcgg
ctcctcgaaagagagtgcatcggtccgaaggctcttcagtggctgctcggagaagtcgaa
cgccatttccaccgggcgctggcgcatgcaggcgagtgcgtcggcgccattgcagcacag
tctatcggagaacctgcgacgcagatgactctcaacactttccactttgccggtgtcgga
agcaaaaacgtgacgctcggtgtgccgcgcctcaaggagttgatcaatgtcgcgaagcag
gtcaagacgccgtcgcttacggtgtatctacaagacgaaatcgcgatggatcaagaacga
gcgaaagacgtccagacgcacttggagcacacgacgttggaccgcgtgacggtcgtgtct
caagtgatctacgacccagatcccacggatacgattattccgcaagatagacagtgggtg
cgggactactacgagtttccggacgacgacgaactgcccagcaacttaggccggtggctg
ctgcgcattcagatggcgagcaaagtgatgatcgacaagaagctgaccatgaaggagatc
ggcgagaagatctatgcggagttccccaacgaagaactcgactgcatctggacagacgac
aacagcgacgacctcgttctccgcatccggctgaagcagcagcctggcgagggcgaagat
gaagacaaagacgaagacgacgttgccgaagcaggcgaccgctttctgcagaaactgatg
gttcaatgtctcgcgggaatcacgctgagaggcatcaccaacatctccaaagtctacatg
cgcgaggaggcgcgaactatctacaacaatcagctcggcaaattcgagcgtacaaacaac
tgggtgctggacacggacggctgcaacttggaagacgtcttgccgattccaatggtggac
gacacgcgcacaacatcgaacgacatgaccgagatttttcatgtcttaggaatcgaagcg
gtgcgtcgcgctcttctccgagagctgcgtgcagtcatttccttcgacgggagctacgtg
aactaccgccatctagcgattctctgcgacaccatgacccagaagggttacctgatgagc
atcacgcgtcacgggatcaaccgcatcgacaaaggcccgctgatgaagtgtagcttcgag
gaaacagtcgagattctcatggaggcggcggtttttgcggaggccgatcacctccggggc
gtgacggagaacatcatgatggggcagctgtgccctctaggcactggctactttgacgtg
ttgatcgacgaagagaagctgaaggatgcgtcgcacaatttggacggactggggggcgct
ggcgagttcgacggcggggtggggacctcgcccacgtcttcggatccactggtgatcacg
cctgacgggtcgttcacgccgtcgccgcacctgaactcggtgttctcgcctatgcccttc
tccaccgtatactcatcttttgcggcgagtcctgcgaaccctctgtctcccacgacgctc
ggaacgaacgcgggtgtagatacacagcaactgggtgggaagttctctccgacgcaacaa
acgccgcggtcgccgacttctcccctgtcgcctctgtcgtgtttctcgccgcgaaatccc
ctcagtcctctctcgccctccggacctcccggtggggtcttctccccgacgtctccgatc
ctcgggagcgccctcgagacgtcctccccgtcgtactcgccgtcgtctccccagtcagcg
tacttccagaacgacggaagctcgagcgccgtggacatggtcatttctcccggcggtgtc
ggctcggacggcagaggccgcggcggatcctactcgccgacgtcgcccactctctctccg
tcctactcgccttctgcccctccgagttactcgcccacgtctcccgcctactcacccaca
tcggcgctgagcatcgcctcgcctgtcccgggagtcggcggagacggtcgcacgcctctc
agtcctttctcgcccagcaacaatccgatgtctccccacttttcagcctctacgtcctac
tcgccgacgtcgcccgttcaacagagcaaccccacttctcccacttctccgtattctccc
gcctactcccccacttcgccgcgctactcgcccacctcccccatgtactccccgaccttc
gcgccgtactccccgcagagcccgagctacggggctggacaaggacctctctcgcccagc
ttcaccgtccagtctcctcgctattcgccgtcttccccggctgcgtactcgccgacctct
cccatgccaaacgttgccggttcgccttcttatgaagattcacatgcgcctgggggagac
acgtactctccaacgtcgcccatgtatgaagcaaatgatcccttctcgccagatccgttt
gccgccgaggttgtcgacgaagtgggagatgtcgctgctctggaaagtccgacagaagat
acactcggccccaaccaaggtcgtggcggatcagcgtag
DBGET
integrated database retrieval system
