KEGG   Toxoplasma gondii: TGME49_233410
Entry
TGME49_233410     CDS       T01093                                 
Name
(RefSeq) Sof1 family domain-containing protein
  KO
K11806  DDB1- and CUL4-associated factor 13
Organism
tgo  Toxoplasma gondii
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:tgo03009]
    TGME49_233410
   04121 Ubiquitin system [BR:tgo04121]
    TGME49_233410
Ribosome biogenesis [BR:tgo03009]
 Eukaryotic type
  90S particles
   Other 90S particles
    TGME49_233410
Ubiquitin system [BR:tgo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     TGME49_233410
SSDB
Motif
Pfam: Sof1 WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_EML Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_IFT122_1st NBCH_WD40 KNTC1_N WD_LRWD1 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 7898372
NCBI-ProteinID: XP_002368200
UniProt: S8F2C1
LinkDB
Position
VIII:complement(join(2630321..2630407,2630639..2630714,2630979..2631173,2631511..2631636,2631945..2632084,2632541..2632581,2633094..2633142,2633740..2633849,2634082..2634151,2634618..2634850,2635473..2635578,2636379..2636504,2637474..2637962))
AA seq 615 aa
MDTEGRGERIGHRACYHASCLSPRLSPCCTSASILVRCFCFARFSPLPFRSLFSCFRSST
TPTLSFPLKRSPSLCISVDGFSLLLSPRCRAASLRRCISSFPFGFSPLGLWFFFSILWHT
SAVAKMVKVKVIHRNPADYVQQKPGQLQRVVRNFDPQMHPFEREREYTRALNAVKLQKMF
AKPLLFCMEGHRDGVKTMVRAKSQATSLWTGSCNGEVAEWNLGATKKCVKVFQAHDGFVR
GLCVSPKDNRLLTGGDDRRIKVWRLRAPSAPLSTLDVAELELQASSALRRSRAENNEEEA
ADDDGQTAHAVPALIDQTPTTVFTSSSVVTCLDHHWSKPLFVATGEEVAVWDVNRSTPLH
SFQWGCDIIHCGRFNPSETGLIAATGADCSVGLYDIRANTPIRKVLMKMRSNAICWNPMN
PPKFTVASEDQNLYTFDMRKLSAPLMIHRDFVNAVLDVDYSPTGQEFAAASFDGTLRIFK
VDESRSRDVYHTRRMQSVLCCRYSTDSRFVISGSADMCVRVWKTEAAAQLGPRTHRERQA
IAYRKTLTEKFAHLKEIKRIARYHHVPKLIKKTQEKKREMADARRRREENRRKHSKPGAV
PYVSVKKKAVYNEVE
NT seq 1848 nt   +upstreamnt  +downstreamnt
atggacacagaaggccgaggagagagaatcggacatcgagcatgctatcacgcatcttgt
ctctctcctcgtctgtcgccttgctgtacttcggcgtcgattcttgttcgttgcttctgt
tttgcgcgcttctcgcctctcccgttccgctcccttttctcctgcttccgttcttccaca
actccaactctgtccttccctcttaagcgcagtccgtctctctgcatatcggtggacggc
ttttcgctgctcctctctcctcgctgcagagctgcgagcctgcgtcgctgtatatcctcc
ttcccctttggcttttctcctcttggcctttggttttttttttccattctttggcacacc
tccgccgtcgccaaaatggtgaaagtgaaggtgatccaccggaatcccgcggactacgtc
caacagaagcctggccagcttcagcgcgtcgtccgaaatttcgatccccagatgcacccc
ttcgaacgcgagcgtgaatacacgcgcgcgctgaatgcggttaaactgcaaaagatgttt
gccaagcctctgctcttctgcatggagggccaccgcgacggagttaagacgatggtccga
gcaaagagccaggcgacttccttgtggacgggaagctgcaacggcgaggtggcggagtgg
aacctcggggcgacgaagaaatgcgtgaaggtgtttcaagcgcatgatggattcgttcga
gggctctgcgtttcgcccaaagacaaccggcttcttactggcggtgacgatcgacgaatc
aaagtgtggcgcctcagagctccgtcggcacccctctccacgctggacgttgcagagctc
gagcttcaggcttcatcggctctgcgccgaagccgtgcagagaacaacgaagaagaggct
gccgacgacgacgggcagacagcgcatgcagttcccgccttgatagaccaaacgcccacg
accgtcttcacttcttcctctgtggtcacgtgtctcgaccatcactggtctaaacctctt
ttcgtggctaccggcgaagaagtcgccgtgtgggatgtcaatcgctcgacgcctctccac
agcttccagtggggatgcgacattatccactgtggtcggtttaatccgtcagaaaccggc
cttattgcggcaacgggcgcagactgctctgtcgggctctacgacattcgggcaaacact
ccgattcgcaaagtgcttatgaagatgagaagcaatgccatttgctggaacccgatgaac
cctccgaagttcaccgtcgcaagcgaagatcaaaatctgtatacgttcgatatgcggaag
ctctcggcgcctttaatgatccaccgagatttcgttaatgcagtgctagacgtcgactac
tctcccactggccaagaattcgctgccgcttctttcgacggcacgctaagaattttcaag
gtcgacgaaagccgaagtcgtgatgtgtaccacacccggcgaatgcaaagcgtcttatgc
tgtcgatactctacagattcgagatttgtcatttcgggttcggcggacatgtgcgtccga
gtctggaagacggaagctgctgcgcagctaggaccacggacacaccgagaacgacaagcc
attgcgtatcgcaagactttgacggagaagttcgctcacttaaaggaaataaagcgcatc
gcaagataccaccacgtgccaaaactaatcaagaagacgcaggaaaagaaacgcgagatg
gccgacgcacggcgacgaagggaagagaaccggcggaagcactcgaaacctggagctgtt
ccttatgtgtctgtcaagaagaaggctgtttacaacgaggtggaatga

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