Toxoplasma gondii: TGME49_233520
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Entry
TGME49_233520 CDS
T01093
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TGME49_233520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgo03041
]
TGME49_233520
03009 Ribosome biogenesis [BR:
tgo03009
]
TGME49_233520
Enzymes [BR:
tgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TGME49_233520
Spliceosome [BR:
tgo03041
]
Complex A
U2 snRNP components
U2 related factors
TGME49_233520
Complex B
TGME49_233520
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
TGME49_233520
Ribosome biogenesis [BR:
tgo03009
]
Eukaryotic type
90S particles
Helicases
TGME49_233520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ResIII
AAA_30
Flavi_DEAD
AAA_7
AAA_16
ABC_tran
ATPase
T2SSE
SRP54
NACHT
Cas3-like_C_2
TsaE
TrwB_AAD_bind
Microtub_bd
AAA_25
Ploopntkinase3
Motif
Other DBs
NCBI-GeneID:
7898386
NCBI-ProteinID:
XP_002368211
UniProt:
A0A125YS58
LinkDB
All DBs
Position
VIII:join(2690037..2690636,2691109..2692083,2692856..2693686)
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AA seq
801 aa
AA seq
DB search
MDGPAPKLDLGSKRALGATGFDEDPRGDSARRRTGFSDGTEAKPSNFSSGPLPQASGFSD
RAPGFAFPGGLPPAQAALPGTVGAASVAAAPLYPNGEVPEGINPYTGAPYSQRYYKILEG
RKKLPSWNAKKNFLKLVKRNRTVILVGETGSGKTTQMTQFLIEAGLHQGKCVACTQPRRV
AAMSVAQRVADEMDVELGKEVGYTIRFEDKSSPMTILKYMTDGMLLREAMADPLLERYSV
VVLDEAHERTLATDVLFGLLKEVCKNRPTLKMVVMSATLDARKFQQYFDDAPILNVPGRM
HPVEIFYTPQPEKDYLEACIRTAIQIHISEPPGDMLIFLTGEEEIEQTKRELEKLAQRHS
ECGELMVVPLYSSLPPAMQQRIFEPAPGPKYEGGKPGRKCVVSTNIAETSITIDGIVYVI
DPGFSKQKVYNPRARVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAFEQELVDQ
TYPEILRSNLGSVVITLKKLGIDDLVHFDFMDPPAPETLMRALEQLNYLGALDDEGELSP
EGESMAEFPLDPQLAKALVDSAKFECSKEMLSIAAMLSVPLTFLRPKERSREADAAKARF
SHLDGDHLTLLNVFHAYVQHGGGSPESERQFCFDNFLNPRSLASAKNVRTQLQRTMERLS
IPLNSTPYTSKEYYSNIRKALVAGYFMQVAHLQRSGHYLTVKDNQTVALHPSTVLDHKPE
WVIYHEYVLTSKNFIRTITQVRGDWLLEQAPHFYNPDDFPECDAKKVLKKMIERQKKEKE
AKATNGNAANESKAPGVPASV
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggacggtcccgcgcccaagttggacttgggctccaagcgggccttgggcgcgacgggt
ttcgacgaagatcctcgtggcgactctgcacggcgccggacaggtttctcagatggcaca
gaggccaagccatcgaacttctcctcgggaccgctgcctcaggcgtcaggcttctcggac
cgagcccccggcttcgcgtttccgggtggcctgcctcctgcgcaggcggccttgcctgga
acggtcggcgcggcgtccgtcgccgcggcgcctctgtacccgaacggagaagtccccgaa
ggcatcaatccgtacaccggggcgccgtattcgcagcggtactacaagattctcgaaggg
cgcaagaagttgccttcctggaacgcgaagaaaaacttcttgaagctcgtcaaacggaac
cgaacggtcattctggtcggagaaacgggaagtggaaaaacgacgcagatgacgcagttc
ctcatcgaagctggcctgcaccaaggcaagtgcgtcgcctgcacgcaacccagacgagtt
gccgccatgagtgtcgcccaacgtgttgcagacgaaatggacgtcgaactcggaaaggag
gttggctacacgattcgattcgaagacaagagttctccgatgacgattctgaagtacatg
acggacggcatgttgctgcgcgaagccatggcggatccgctgctggagcgttacagcgtg
gtggtgctggacgaggcacacgaacgcaccttggccacagacgtcctcttcggcttgctc
aaggaagtatgcaagaaccggccgacgctgaagatggtggtgatgagtgcgacgctggac
gcgcgcaagttccagcagtactttgacgacgcgccgattctgaatgtgccgggccgcatg
caccctgtcgagatcttctacactccgcagcccgagaaggactacctggaggcctgcatt
cgcactgcgattcagatccacatctccgagccgcccggggacatgctcatctttctcacg
ggtgaggaggagatcgagcagacgaagcgggagctggagaagctcgcgcagagacactcc
gagtgcggcgagcttatggtcgtcccgctctactcctcgttgccgcccgcaatgcagcag
cgaatcttcgagcctgcgccaggcccgaagtacgagggcgggaaacctgggagaaagtgc
gtggtcagcacaaatatcgccgaaacgtccatcaccatagacggtatcgtctacgtcatc
gaccctgggttctccaagcagaaagtgtacaacccgcgagcgcgcgtcgagtcgcttctc
gtctcgcccatctcgaaggccagcgcccagcaacgcgccggaagagccggaagaactcgc
cctggaaagtgctttcgactgtacactgagaaggcctttgagcaagaactcgtcgaccaa
acctaccccgagattctccgcagcaacttgggaagtgtcgtcatcactctgaagaaactc
gggatcgacgacctcgtgcatttcgacttcatggacccacctgctccggaaaccctcatg
cgtgctctcgaacagctgaactacctgggagcgctcgacgacgagggggagctctctccg
gagggcgagtcgatggcggagtttcctctcgacccgcagctagcgaaggcgctggtggac
agcgcgaagtttgagtgcagcaaggagatgctgtcgattgcggccatgctttcggtgccg
ctgacgtttttgcggccgaaggagcggagtcgcgaggcggacgctgccaaggcgcgcttc
tcccacctggacggggaccacctgaccctgttgaacgtgtttcacgcatacgtccagcac
ggaggcgggagccccgagtcggagcggcagttctgcttcgacaacttcttgaatccgcgg
tctctggcgtctgcgaagaacgtccggacgcagcttcagcgcaccatggagcggctctcg
attccgctgaacagcacgccgtacacgagcaaggagtactactcgaatatccgaaaggca
cttgtcgctgggtactttatgcaggttgcgcacctgcagcggtcgggccactacttgacc
gtgaaagacaaccaaaccgttgcgctgcacccgtccacggtcctcgaccacaaaccggag
tgggtgatctaccacgagtacgtcctcaccagcaaaaactttattcgcaccatcactcaa
gttcgcggcgactggctcctcgaacaggccccgcacttctacaaccccgacgactttccc
gagtgcgacgcgaagaaagtcctcaaaaaaatgattgaacgccagaagaaggaaaaggag
gcgaaagccaccaacggaaacgccgcgaacgagtcgaaagccccaggtgttcccgcctca
gtctga
DBGET
integrated database retrieval system
