Toxoplasma gondii: TGME49_233930
Help
Entry
TGME49_233930 CDS
T01093
Name
(RefSeq) CAF1 family ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_233930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_233930
Enzymes [BR:
tgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TGME49_233930
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TGME49_233930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
R3H
nec1
V-ATPase_H_C
Motif
Other DBs
NCBI-GeneID:
7898863
NCBI-ProteinID:
XP_018636758
UniProt:
S8GAC3
LinkDB
All DBs
Position
VIII:join(2902509..2903535,2904224..2904340,2905127..2905293,2906105..2906195,2906780..2907017,2907707..2907880,2908317..2908447,2908835..2908985,2909330..2909653,2910186..2910434,2910891..2911142,2911610..2911667)
Genome browser
AA seq
992 aa
AA seq
DB search
MRNTPLARGICPVPLLSRCSLTQRIPAFRQVSPRFSGLPTETRHESLSPESILPGKGQVP
SGFLSTYTRASEKRCDANRLANSITHSSAVAASTSFVASSSRTRHGHSCTPNPRRGGAPG
AGTTQWAVTNEQNPLEFDSDIHRLCESSSSTASSCHGSMEKAIHCGRRLPLHFCPVEGRS
FQRYPLPQSFKCTYISEPTTEAFLPAHNSVRRDVSSFPRVCPPRFPFSFSCCAFSSSSVF
SSSASSAVSWEVSRENAPLSRSLLNTREVARTNLQTAFRFSTLQFFSTLPRQNSETDREH
RLEESPLHATHTTNRESWPTHLEALREVLAKAEFVALDVELTGLHMKNEKFLGVDRCYEA
HCEGAKNFLPVQLGLCAARRASAAEPHKWILTPASVYMFPRDARLFQASTGTLMFLRENG
FDFNKWLDQGIPFLRAQEEKEKRQALQVRIDDLEHLIKHRSRSATLRESQESSSLLDTSK
TEDRELAASARAAIHAWLASSSPEPLHLPVESPLQRLLLHSLVAAEFPSLYSLSVKVGDR
RVLAIYQSEEEVYEEQLRGLREDIHRVEELRGVRQLLDDVSDQKLLVVGHNCFYDFLHIF
QTLYADLPQSVSEFKTTWTQLFPATFDTKLIAESHDALAPLQSPATLQGLCSFMGALAVA
SQEPLSKEEQGEREREKPALGMPAPLQFQLELLPGTKWTLPPAVQPLSVPPVSLFPARPT
RGSSVSPRAEESGDRLEDAGEKAMTGRTEEQTAAVSAQDQDASSTTVEEDFSHDAGYDSM
MTTIVFLLQLSHVLPRQGLKWKNIQFRAEGGRTLGRRQGLLAGLGEPRRIASAACKEKHS
SSGVQEGDKEERVQRTTGRLTASEEIQNIMDSTQRKAITDLLPLFVNRIRLSRSQPSSIN
LGGQDEQLQQQKRLLLMRNHPTHWKKWEIMKIWSPVWVDVQPVDSSTSWIVVRDEEDLQN
VMAIYEMLQNPEFELLNYDQYRALQQQQQQRP
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgcggaacacgccgctcgctcgagggatttgccccgtcccgcttctctcccggtgctcg
ttgacgcagagaatccctgccttccggcaagtatctcctcggttttctgggcttccgacc
gaaacgcggcacgaatctctttccccagagtctattttgcccggaaaagggcaggtgccg
agcggctttctcagcacctacaccagggcttcagaaaaaagatgtgatgctaaccgactt
gcaaacagcataacgcattcttctgctgtggccgcgtccacatctttcgtggcgtcttcg
tcaagaacgcgacatggtcacagctgcaccccaaacccccgcaggggaggcgctcctgga
gctggaacaacccagtgggcagtgactaacgaacaaaaccctctcgagtttgattcggac
atacatcggctgtgcgaatcttcctcctctactgcatcttcttgccacggatcaatggag
aaagcaatacactgtgggcggcgactgccgctccatttttgtccagtcgaaggtcgctcg
ttccaacgctacccgttaccgcaaagcttcaagtgtacatacatctcggagcctaccacg
gaagcgttcctgccggctcataattctgttcggcgtgatgtctcttcatttccacgggtt
tgtccgcctcgtttccccttttctttttcgtgttgtgccttttcgtcttcttctgtcttc
tcttcgtccgcctcatcggccgtttcgtgggaggtttctcgcgaaaatgctccactgtcg
cggagcctcttgaacaccagggaggttgcccggactaacttacaaaccgcgtttcgtttt
tctactctccagtttttctcgacgcttccgcgacagaactctgagaccgatcgcgaacac
cgactggaagaatctcccttgcatgcgacgcacaccaccaacagagaatcatggccgacg
cacttagaggcgctacgcgaggtcctggcaaaagcagagttcgttgctctcgatgttgag
ttaactggcttgcacatgaaaaacgagaaattccttggtgtcgaccggtgctacgaagct
cactgcgaaggcgccaaaaatttcctgcctgtgcagctcggactctgcgctgcacgccga
gccagcgcagcagagccacacaagtggatcctcacacctgcgagtgtgtacatgtttccg
cgcgacgctcggctgtttcaagcgtctacggggactctcatgtttcttcgagaaaacgga
ttcgatttcaacaagtggctggaccaaggcattccttttctccgggcacaggaggagaag
gagaaacgtcaggccttgcaggtccgcatcgacgatctggagcatttaatcaaacatcgg
tcgcggagcgcgacgctgcgagagagtcaggaatcttcttccttgctggatacgagcaag
acagaagacagagaactggcggcatctgctcgcgcggcgattcacgcgtggctagccagc
agctcgccagagccgctccaccttcctgtggaaagccctcttcagcgactgcttctccac
tctctcgtggcagccgagtttccttctctctactcgctttccgtcaaagttggcgaccga
cgcgtgctcgccatttaccagtccgaagaagaggtgtacgaggagcagctgcgcggactc
cgagaggacatccacagagtggaagaactccgcggggtgcgtcagctgctcgacgacgtc
tctgaccagaagcttcttgtcgtcggccacaattgcttctacgacttcctccacatcttc
cagaccctctacgccgaccttccccagtctgtctccgaatttaagacgacctggacgcag
ctctttccggccacgttcgacacgaaattgattgcagagtctcacgatgcccttgcccct
ctgcagtcccctgcaacgctccaaggcctctgcagtttcatgggcgccttggctgtcgct
tcacaggagcctctttccaaagaagagcaaggagaaagagaacgcgaaaagcctgctctt
gggatgcctgcgccgttgcaatttcaactggaactgcttccaggcaccaagtggacgctg
ccgccagcggtccagcctctgtccgtccctcctgtttccctgtttcctgctcgccccaca
agaggctcctctgtgtctccgcgagcggaagaaagcggcgacagattagaagatgcagga
gagaaggcgatgacggggcgaacggaggaacaaacagctgccgtgagcgctcaggatcaa
gacgcaagttcaacaaccgtcgaagaagatttctctcatgacgctggatacgacagcatg
atgacgacgattgtctttcttcttcaactgtctcacgtgcttcctcgacagggactcaaa
tggaagaatatccagttcagagcagaaggcgggaggacgctggggaggcggcagggcctt
ttagccggcctgggagagccacggagaatcgcgagcgcagcatgcaaagaaaagcactcg
tcttctggggtccaggaaggcgataaagaggagcgagttcagaggacaactgggcgtctg
actgcttcagaagaaatccagaacatcatggacagcacgcagcggaaagcaattaccgac
ctcctgccgctcttcgtcaatcgaatacgcctgtcgcggtctcagccttcgtcgattaac
ctgggaggccaagacgagcaacttcagcagcagaagcgtctccttttaatgagaaatcat
ccgacgcattggaaaaagtgggaaatcatgaaaatatggtctccggtttgggtggatgta
caacccgtggacagctccacatcgtggatcgtcgtccgcgatgaggaagacttgcaaaac
gtcatggccatctacgagatgcttcagaatccggaattcgaacttttgaactacgaccag
tatcgcgctttgcaacaacagcagcagcaacggccgtag
DBGET
integrated database retrieval system
