KEGG   Toxoplasma gondii: TGME49_261050
Entry
TGME49_261050     CDS       T01093                                 
Name
(RefSeq) RNB family domain-containing protein
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
tgo  Toxoplasma gondii
Pathway
tgo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TGME49_261050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgo03019]
    TGME49_261050
Messenger RNA biogenesis [BR:tgo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     TGME49_261050
SSDB
Motif
Pfam: RNB OB_Dis3 Rrp44_S1 CSD2 PIN_4 OB_HELZ2 Rrp44_CSD1 DUF7464
Other DBs
NCBI-GeneID: 7899618
NCBI-ProteinID: XP_018637089
UniProt: S8GLW0
LinkDB
Position
VIIb:join(1885595..1885898,1886301..1886425,1887079..1887186,1887638..1887725,1887965..1888113,1888558..1888659,1889071..1889290,1889556..1889966,1890449..1890528,1891078..1891158,1891829..1891901,1892219..1892418,1893130..1893172,1893872..1893980,1894375..1894527,1895078..1895390,1896187..1896344,1897359..1897464,1897938..1898189,1899173..1899356,1899915..1900053,1900368..1900422)
AA seq 1150 aa
MAYSLLPGSTARRLAGEATDQAECEGKEGRRREREDEGEMELDFCEEGVSHANRRLLTFL
KATRRGKIQKVVREIYLRDDLPCGIAGCCLCYDPSDETERKGLLSIDERILLLDTNVALR
QLDFLQEDPCINNCLLLSSVLSEVRRRNLQTYSALLSLCRQSADSSSGTRKPGVGASSRG
DRESERAEKRFTAFANDVFRATFVDREEEETLEARDRRSLFAAARWFSDHLLAAGAALGL
DASHLGRVTILTDEKKRKIEAEQRGLEALTLREFVEEMRARYPTAGEKLAQLEDEGEDEP
AVADGEGALGQRRTEGTAKRRKTAFYDAHLREEEITRQLKTGKLLKGKLRMAPTCSWRGV
VLLSGGREVKIRGKKNLNRAVEGDVVAVELLARADQLKSEKEQTEEREEERREPSAKSPE
EAETRVINEKAVAAGNFMRESEQDIQEIEDDARVFPTAEMTDDELGPEDADDEEMEGKVV
GIIRKNAREFCGTIRPFDNPFRTETATSGLPTEVVFIPADPRIPNIILKTRQYEQLLNKR
IVAVIDSWDRFSRNPRGHWTEILGEFGSAEAEANVILREQGVVSRDFSLASLRCLPANTW
TFADMSEEDRKGRLDLRHVCVCSVDPPGCKDIDDALSLEVLENGNYRVGVHIADVTYFLK
EGTALDEEASERCTTVYLVERRTDMLPSLLTTDLCSLVGNQDRLAFSVLWEMTPEGDIVS
SSFHKTFIHSRAALTYAEAQNMIDDPNDKSELAENLRRLLAISKVIRRKRTEAGALQLAS
PDVQIIRDTLKDNRDDKTQPPVKPTETRRGDITSEKNENGEKGERAKECYAEEVVQEEAS
DIALYQARETNRMVEDFMLLANTTVAEKIVSYFPSASLLRRHPDPKEKQLEALKELLKSR
GIENFEFSSSKRLAASLNAVAKAAPELDFLVRILTTRCMNQAVYFSSGDILSNAHSAKQS
LTAALSSSSSSVDISPYFHHYGLAAPLYTHFTSPIRRYADVVVHRMLAAAIGIAEVPRVC
RNKQQLSQQCELLNVKHRNAQIAGRNSVQYHVYMYFKNKGAKEAVGTVTKVKKNGAMVYV
HKYGLEGVVFFNEREYSFDADEQHLVNRSSGETVQIFDALLVRIEAEQSNDFRPSVAMKL
IRKATDQERA
NT seq 3453 nt   +upstreamnt  +downstreamnt
atggcgtactccctgcttccggggagtacagctcggcggctggcgggcgaggctacggac
caggctgagtgcgaggggaaggaaggacgacggagagaacgcgaagatgagggagagatg
gaactcgatttctgtgaagaaggcgtctctcacgcgaaccgcagactcctcacttttctc
aaggcaacgcgtcgcggcaaaatccagaaagtcgttagagaaatctacttaagagatgac
cttccctgcgggattgccggctgctgtctctgctacgacccttcagacgagaccgaacgc
aaaggccttttgagcatcgacgagaggatccttctcctcgacaccaatgtggcgctgcgg
cagctggatttcctccaagaggatccttgcatcaacaactgccttcttctttcgtccgtt
ctctcggaggtccgccgaaggaatctgcaaacttattcggctctcctctctctttgccgg
caatctgctgattcgtcgagcggcacccgcaagccaggagtgggggcttcttctcgggga
gacagagagagcgaacgcgcggagaaaaggttcacagcttttgccaacgacgtgtttaga
gcgactttcgtagaccgggaggaagaggagacacttgaggcgcgcgacaggagatctctc
ttcgcggctgctcgttggttttccgatcacctgctcgccgccggcgccgcgctgggcctc
gacgccagccacttgggacgcgtcacgattttgacagacgagaaaaagcggaagattgag
gccgagcagaggggcctcgaggctctgactctccgcgagttcgtcgaggagatgcgcgcg
cgttacccaacggctggcgagaagttagctcagctggaagacgaaggggaggacgagcct
gctgtggcagatggggagggcgcgctcggacagaggagaaccgagggaacagcaaagagg
aggaagacagcgttctacgacgcccaccttcgagaggaagaaatcactcgccagttgaaa
acggggaagctgctaaagggcaaactccgcatggcgccgacctgcagctggagaggcgtc
gttctcctctctggaggccgcgaagtgaagattcgcgggaagaagaacctgaatcgcgcc
gtcgagggggacgtcgttgccgtcgagcttctcgctcgcgctgaccagctgaagagcgaa
aaagagcagacagaggagagagaagaagagcggagagagcccagcgcgaagtctccggaa
gaagccgagacacgcgtcatcaatgagaaagctgtcgcggccggcaacttcatgcgcgag
tctgaacaagacatccaggaaatcgaagatgatgctcgtgtgttccccaccgcagaaatg
acggacgacgaactgggtccagaggacgccgatgacgaagaaatggaaggaaaagtcgtc
ggaatcatccggaaaaatgctcgcgaattctgcggcactatccgaccgtttgacaatccc
ttccggacggaaactgcgacaagcggccttcccactgaagtcgtgttcattcccgcggat
ccgagaatccccaacatcatcttgaagacaaggcagtacgaacaactactaaacaagaga
attgtcgccgtcatcgactcttgggaccgcttctctcgaaatccacggggtcactggacg
gagatccttggcgaatttggatcggctgaggcggaggcgaacgtcattcttcgagagcaa
ggagtcgtttcacgagatttctctctcgcttctctgcggtgtcttccggcaaatacctgg
acttttgccgacatgtctgaagaagacaggaaagggcgtcttgatcttcgtcacgtttgc
gtgtgttcagtggatcctccagggtgtaaggacatcgacgacgccctcagcctcgaggtt
cttgaaaatggaaactaccgagttggagttcatatcgctgacgtcacgtatttccttaag
gaagggactgcactggatgaggaggcgtcagagagatgcacaactgtctacctcgtggag
cgccgtacggatatgcttccttcgctgttgaccacggatctctgctctcttgtagggaat
caagatcgccttgcgttctcggtcctttgggagatgacccccgaaggagacattgtctct
tcttcgttccataaaacgttcatccactcgcgggcagccttgacctacgccgaagcgcag
aacatgatcgacgaccccaacgacaagtcggagctggcggaaaatttgcggcggctgttg
gcaatttcgaaagtgattcggagaaagcgcacggaggccggggctcttcagctcgcttcc
ccggacgtccagatcattcgagacactctgaaagacaaccgcgacgacaagacgcagccg
cccgtaaaaccgacggaaacgaggagaggagacatcacttcagagaagaacgagaacggc
gagaaaggcgaacgcgcgaaggagtgctacgctgaagaagtcgtccaggaagaggcttca
gacatcgcgttataccaggcgcgagaaacaaaccgaatggtcgaagacttcatgctgctg
gccaacacaactgtcgcggagaaaattgtcagttactttccttctgcgagtctcttgcgg
aggcaccccgatccgaaggagaagcagctggaggcgctaaaggaacttttgaagtccaga
ggcatcgaaaatttcgagttctcttcgtcaaaacgattggcggcttcacttaatgccgtg
gcaaaagctgcgccggaactggatttccttgttcgcattctgacgacgagatgcatgaac
caggcagtgtacttcagctccggagatatcctttcaaatgctcactccgccaagcagtcc
ttaactgcggctctttcttcgtcctcgtcgtccgtcgatattagtccttacttccaccac
tacggtctggcagcacctctgtacactcactttacttctcctatccgaagatacgccgac
gtcgtcgtccaccggatgttggcagcagcgatcgggatagctgaagtccctcgcgtgtgt
cgaaacaaacaacagctgtcgcaacaatgcgagttgctgaacgtgaaacaccgaaacgca
cagattgccggacgaaacagcgtccagtatcacgtgtacatgtatttcaagaacaaggga
gcgaaagaagccgtaggcacggtgaccaaagtcaagaagaacggggctatggtgtacgtc
cacaagtacggccttgaaggagttgtctttttcaacgagcgggagtattcgtttgacgca
gacgaacaacacttggtaaatcgctcttcgggcgaaaccgtccagattttcgatgcgctt
cttgttcggattgaggcagaacaatccaacgacttcaggccctcggtcgcgatgaagttg
attcgaaaagcaactgaccaagagcgcgcgtag

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