Toxoplasma gondii: TGME49_263650
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Entry
TGME49_263650 CDS
T01093
Name
(RefSeq) pre-mRNA-processing protein 8, putative
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TGME49_263650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tgo03041
]
TGME49_263650
Enzymes [BR:
tgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TGME49_263650
Spliceosome [BR:
tgo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TGME49_263650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
AAA_22
DEAD
Cas3-like_C_2
T2SSE
nSTAND_NTPase5
AAA_19
Motif
Other DBs
NCBI-GeneID:
7899556
NCBI-ProteinID:
XP_002365465
UniProt:
S8F1Z3
LinkDB
All DBs
Position
VIIb:join(411993..413171,413741..413986,414604..414797,415189..415458,416200..416420,416934..417235,418037..418295,418777..418952,419351..419629)
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AA seq
1041 aa
AA seq
DB search
MGEASDGLSPSRVRELLHATLGFSTRAVADMVLDAALSSSSLSSLSSRLQEVGLSPSQAS
RLATVLSSERGASSSSSSSSSSSSSSSSFSSSSSLPPSSASRPREGSRSVSPDSKRARTG
DSVEERRRAEEEDIAERDAFAARLRAREQASSRKVGAGRLRHSELEKEGEAEQEKEQDRA
GGADLDDPLAILLEARKGRNEKLRDNEDYVKRLREETRRAYLKKREEDRIEFAERTLREK
QWMFAGEKLTEKEKKDLEVERTTLELAKTVVRERESHGVVDAYVMPDSYDEDQAARLKVM
HQKYVEAKEHVSEQLLVERQKAAHARVAFGAQRGRDAAAKAYSLLNEEGAAIDFELLETH
GKQPLDDEDWNLSRDEKEEKATHQRKLARLSLQEERKMLPVYAFRTEFLRAVREYPVLIV
VGETGSGKTTQLPQYLYEVGYGKAGKIGCTQPRRVAAMSVAARVATEVGCRLGLEVGYSI
RFEDCTSDRTVLKYMTDGMLLREFLTEPDLASYSVMMIDEAHERTLHTDVLFGLVKDLAR
FRNDFKLIVSSATLEAEKFSEYFDRAPIFRIPGRRYPVQIYYTKAPEANFIDATVVTVLQ
IHLTQPLGDVLVFLPGQQEIEEALEELERRVRGRGTEIGELILLPIYSTLPGELQAKIFA
PTPEKARKVVLATNIAETSITIDNIVYVIDCGFCKQNTYSPKTGMESLVTVPCSKAAVNQ
RAGRAGRVKPGHCFRLYTRFSYEKEMEDANIPEIQRTSLGHVVLALKSLGIDDLINFDFM
DPPPPETLIKALELLYALAALNDKGQLTKLGRRMAEFPLEPMYSKMILQGEKYKCVDECI
TICAMLGVGNSIFYRPKDKAMHADNARKNFFRPGGDHLTLLNVYKQWEETSFSVPWCYEN
FIQHRSIQRARDVREQLLDLLDRVEVELSSDPTDESAIKKAVTAGFFTQGARLNRNGTYS
TIKQPHTVEIHPHSSLFGESPKVVLYTELVLTTKEYMRNVLEIRPDWLLEVAPHFYRDKE
LELGRMPLQMKQRQRIKQETD
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgggggaggcgtctgacggcttgtctccctcgcgggtgcgtgagcttctccacgccact
ttgggattttcaacgcgcgcggttgcagacatggtcctggacgctgctctttcttcttct
tctctctcttctctctcttctcgcctccaagaggtcggcctctctccctcacaagcttct
cgcctagcgactgtcctctcctccgaacggggtgcttcttcttcttcctcttcttcttcc
tcttcttcttcctcttcttcttcgttttcttcctcttcttctctccctccttcttctgct
tctcgtccgcgagagggatcgcgttcggtgtctccggactcgaagcgcgcccgcactgga
gactctgtggaggagaggaggcgcgcagaggaggaagacattgcagagcgcgacgcgttc
gctgcccgcctgcgcgcgcgcgaacaggcgagttccaggaaggtgggcgccggacgcctt
cgtcactccgagttggagaaagaaggcgaggcggagcaagaaaaagaacaagaccgagcg
ggaggcgcggacctggacgacccgctggcgatccttctggaggcgaggaaggggagaaac
gagaagctccgagacaatgaggactatgtgaagcgtctgcgagaggagacgcgccgagcg
tacctgaagaagcgcgaggaagaccgcatagagttcgccgagaggactctgagggagaag
cagtggatgtttgccggcgagaagctgacggagaaggagaagaaggacctcgaggtggaa
cgcacaactctggagctggccaagacggtcgttcgggagcgcgagtcgcatggcgtcgtc
gacgcgtacgtgatgccggactcgtacgacgaggaccaggcagcgcgcctaaaagtcatg
catcaaaaatacgtggaggcgaaggaacatgtcagcgagcaactccttgtcgagcgacag
aaagcagcgcatgcgcgcgtcgccttcggtgcacagcgtggacgagacgccgcggcgaaa
gcctactcgctgttgaacgaagaaggcgctgcgatcgacttcgagctcctcgaaacgcat
ggcaaacaacccctcgacgatgaggactggaacctctcaagagacgaaaaagaagagaaa
gccacacaccagcggaaactcgccagactctctctccaggaggagcggaagatgttgcct
gtctacgccttccggacggagttcctgcgagccgttcgcgagtacccagtcctcatcgtg
gtcggcgagacaggcagcgggaagacgactcaactgccgcagtacctctacgaagtcggc
tacggcaaagctggcaaaatcggctgtacgcagccgcgaagagttgcggccatgtcagtc
gccgcccgcgtcgcgaccgaagtcggatgcaggctcggcctcgaggtgggctattcaatt
cggttcgaggactgcacttcagacagaacagttctgaaatacatgacggatgggatgctc
cttcgagagttccttaccgagccggacctcgccagctactccgtcatgatgatcgacgaa
gctcatgaacggacgctccacacagacgttctcttcggcctcgtcaaggatctcgcgaga
tttcgaaacgacttcaagctcattgtttcctccgccactttggaggcggagaagttttcc
gagtactttgatcgagcgccgatttttcgcattcctgggagacggtaccctgtccagatt
tactacacgaaagctccagaggcaaacttcatcgatgccaccgtcgtcactgttttgcag
attcatttaacgcagcctctcggtgatgtcctcgtcttcctgcctgggcaacaagaaatc
gaggaagctctcgaggagctcgagcgaagagttcgggggcgaggaacggagatcggggag
ttgattctgttgccaatttactcaacgttgcccggcgagctgcaggcgaagattttcgcg
cccactccggagaaggcgaggaaggtcgttctcgcgacgaacatcgcagagacttccatc
acgatcgacaacatcgtctacgtcatcgactgcggcttctgcaagcagaatacctacagt
cctaaaaccggaatggagtcgctggtcaccgttccttgcagcaaagcagcagtgaaccag
cgagcggggcgcgccggacgagtgaagccaggtcactgtttccgactgtacacgcgcttc
tcttacgagaaggaaatggaagacgcaaacattccagaaatccagcgaacgagtctcggt
catgtcgttctcgcgctgaagagtctggggatcgacgacctcataaacttcgatttcatg
gacccaccgcctccggagacgctcatcaaggctctcgaactcttgtacgctctcgccgcc
ctcaatgacaagggtcagttgacgaagctaggacgacgcatggctgagttcccgctggag
ccaatgtactcgaaaatgattcttcagggagagaaatacaagtgtgtcgatgaatgcatc
accatatgcgccatgctcggcgtgggcaacagcatcttctaccgacccaaagacaaagcg
atgcatgcagacaacgcaaggaaaaacttctttcgaccggggggcgaccatctcactctc
ctcaacgtctacaaacagtgggaggaaacctctttttcggtaccctggtgctacgagaat
ttcatccagcatcgatcgattcagcgcgctcgagatgtgcgagagcagcttctcgacctt
ctcgacagagttgaagttgaactttcttccgatccgaccgacgaaagcgccatcaaaaaa
gcagtgactgccggatttttcactcagggtgcccgcttgaatcggaatggaacctactcg
acgattaagcagccacacaccgtggagattcatccgcactccagcttgtttggcgagagt
ccgaaggtcgtcctgtacaccgagttggtcttgacaaccaaggagtacatgcgaaacgtc
ttggagattcgccctgactggctgctcgaggtggcgcctcacttttaccgagacaaggaa
ctcgagctcgggagaatgcctctccaaatgaagcaaaggcagagaatcaaacaagaaact
gactga
DBGET
integrated database retrieval system
