Toxoplasma gondii: TGME49_272630
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Entry
TGME49_272630 CDS
T01093
Name
(RefSeq) U6 snRNA-associated Sm family protein LSm8, putative
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
tgo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TGME49_272630
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_272630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_272630
03041 Spliceosome [BR:
tgo03041
]
TGME49_272630
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TGME49_272630
mRNA degradation factors
5'-3' decay
Lsm complex
TGME49_272630
Spliceosome [BR:
tgo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TGME49_272630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
7893501
NCBI-ProteinID:
XP_002365895
UniProt:
A0A125YFN3
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All DBs
Position
VIII:join(3834120..3834150,3834723..3834891,3835523..3835712)
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AA seq
129 aa
AA seq
DB search
MAQVLQTLVDQKVEIVTVDGRVFVGTLKGFDQSTNLILDKCEERIYSVDAAVEQIALGLY
LIRGDNIAVVGEVDVEVDESIQLSSVRAAPLKPVRFCFLSVSFYFRHFSRSRSSPRSRKG
PCMFWSRLG
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggtgcttcagactctcgttgaccaaaaagttgaaattgtcactgtcgacgga
cgcgtgtttgtcggcactctgaaaggctttgaccaaagtacaaacttgattctggacaag
tgcgaagaaagaatttacagcgtagatgccgcagtcgaacagattgcgctcggcctctat
cttattcgaggcgataacatcgcggtcgtcggagaggtcgatgtggaggtagatgagagc
attcagctgtcgtcggttcgtgcagctcctctcaagccagtacgtttctgctttctttcc
gtctccttttattttcgtcatttttccagatcgcgttcttcaccgaggagcaggaaaggt
ccgtgcatgttttggtctcgacttggctag
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