Toxoplasma gondii: TGME49_291820
Help
Entry
TGME49_291820 CDS
T01093
Name
(RefSeq) RNA helicase (UPF2 interacting domain) protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03013
Nucleocytoplasmic transport
tgo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TGME49_291820
03015 mRNA surveillance pathway
TGME49_291820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_291820
Enzymes [BR:
tgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TGME49_291820
5.6.2.5 RNA 5'-3' helicase
TGME49_291820
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TGME49_291820
mRNA cycle factors
Common to processing body (P body) and stress granule
TGME49_291820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
AAA_30
AAA_19
UPF1_1B_dom
DEAD
AAA_25
UvrD-helicase
SLFN-g3_helicase
ResIII
nSTAND3
AAA_22
PhoH
AAA
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
7896460
NCBI-ProteinID:
XP_002368524
UniProt:
S8F0E9
LinkDB
All DBs
Position
IX:complement(join(4367931..4367978,4368604..4371815,4372447..4372670,4373014..4373113,4373955..4374990))
Genome browser
AA seq
1539 aa
AA seq
DB search
MSAFCALRVKTFSRYESCGVYSLRFLWAHLACKCRLSPFLVLLLPSLQVSEFLFVCFCRQ
PKALSECGLREETQRVPFLSANLTASLVVNMASPNSFDISDFIFDAADLNFTPNGGAVST
VPGVDVDEDFSSPLPPSGPTARLDSYPPSSGRNTSDEAYQQADASTASPQRCPLPSGGVS
GDGAVEDLQEKLDRLHLAPEEDWSNLHSGPGPSGSVDASVATLSSLAERQETVGRSGSGE
VPESHRKCAQDGTPNGVHAGDAGEPREELKEDHGRGGKATKEIPEHACSYCGASSPDCVL
KCCCCNKYFCNSPCSASGSSMGSHIIFHLVKSRHREVMLHPEGPLGDCTLECFQCGSRNV
FLLGLIPAEQEGVVVLICREPCLSSGALKQSGWDLTQWQPLIEGKSFLPWLVRSTLTAEE
QRDCHVVTTQQLQRLEELWQKNPQATLEELSQTKEEAPLPCVKLVYEDGFDYQRTFAPLV
QAEADFDKQIKDGQKLVRVKLRWEQGLNRRRLAYFMYSRDEGCNVRVAAGDEVKISTVLP
KSVLSGASSSAPASSGGSHGSGCTYSNEATSSNGVGSGGTAGLEGDGNFVQWSCTGSITR
FSEDSEEVIVEVKKPPNAKGAWDSPVPLLYTIEFVWKSTSFERMQAALRQLAVDEISVSS
YLYHTLMGKQMEHQIIQTPMPLQISAPNLAPLNPSQMLAIRYALQHPLSLIQGPPGTGKT
LTCSTLVYQMVKLSEVGSHIHPRCAGRVNKEGGQVLVVAPSNVAVDQLAERINRTGLKVI
RMYSKSREGASSSLTSFCVENLALHKKVLELKTGSSDEMAKYIQLKEQTGELAAADERRL
RLLISRAEMEILQTADVICTTCVGAGDNRLQGFRFRQVVIDEAAQATEPECLIPIVLGAK
QVVLIGDHCQLGPVVLSKKAAAAGLATSLFSRLLALGHRPLRLKVQYRMHPALSFFPSYF
FYEGELQNGVTMTERTYFHQGPGDHRFPWPNEERPMFFYHSTASEEISGSGTSYVNRVEA
SNIEKIVTFLLKCGLKASQIGVITPYDGQRAHISSLFQRQTTLGQAAFADLEVASVDAFQ
GREKDFILLSCVRSNSNTGIGFLADSRRLNVAMTRAKYGLIICGNATVLANYMPRVARPP
GAPAAPPPGSGTTGLPGNALGPCGVQVGPGASTLSGTPCVPEPPIWRLLIHHYLKYDLVV
DGPLSNLKPSKIRITLPPLTPFGALTAAGASKGGRGGAGATKGKLGKIKAASRHIAPEEL
QDYDRHATTSGYLQTVPSSGGLSAGQPNAGPPPASTYIPNGAGGYYSAPPLYPCAAFAAL
LGADRGFQSQSPMPSSSLMAAHAASGTAFYYPSGQGGALAAAAVSGADHQTLRAPAAYFS
GRDAEAGGFSGGSQGASAACASSSFRDSGAGLGQSGAGASKSNTRPGEGPHGAVDVISRA
IAGGGAFASRPFPTETADAGTATPGAGKRGGPKSSDRDARNETRGLGESLGPANASGASD
PDFVGRDSGCASRPNRAATVVSEQLDDDSFTFIGSQVGF
NT seq
4620 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattctgcgctctaagagtgaaaacgttttcccgatacgagagctgtggtgtc
tactcgcttcgttttctttgggcacatcttgcatgcaagtgccgcttgtcccctttcctg
gtactccttttgcccagtttgcaggtgtccgagtttctgtttgtctgtttttgtcgccag
ccgaaggcattgtcggagtgtggcttgagggaagaaacgcaaagggtgcctttcctctct
gccaatttgacggcttctttggttgtcaacatggcgtcaccaaatagcttcgatatttcg
gacttcattttcgatgcagcggatctcaattttaccccaaacggtggagcggtgtcgact
gttccgggagtggacgttgacgaggatttttcttcgccgttacctccgagcggccccacc
gcacgcctagattcttatcccccgtccagcgggaggaacacctctgatgaagcctaccag
caagcagacgcttcaactgccagtccgcagagatgtcctcttccgagtggcggcgtttca
ggagatggagcggtagaagacctgcaggagaaactcgatcgtcttcacctggctcccgag
gaagactggtcgaatttacactctggcccgggtccctccggaagcgtcgatgcctccgtc
gccacgttaagctcgcttgccgaacgccaagaaacagtgggccgttctggttccggggag
gtgccagaaagtcacagaaagtgcgctcaggatggcaccccgaatggcgtgcacgccggt
gacgcgggagaacccagagaggaactgaaagaggaccatggccgtggcggaaaggccacg
aaggaaattccggaacacgcctgcagctactgcggtgctagctctccagactgtgtcttg
aaatgctgctgctgcaacaaatacttctgcaacagcccctgcagcgccagtggaagcagc
atgggttcccacatcatcttccacttggtcaaaagccgacacagagaagtcatgcttcat
cccgagggaccgctcggtgactgcacgctcgaatgtttccagtgcggaagtcgcaatgtt
ttccttctcggccttatccctgcggaacaagaaggtgttgtcgtcctcatatgccgggag
ccctgtctgtcgagcggtgctctgaagcagagcggatgggacctcacgcagtggcagccg
ttgattgaaggcaaatcgtttcttccctggcttgtccgatcaacgctgacggcagaggaa
caacgcgattgccatgttgtcaccacgcagcaacttcagcgactggaggaactttggcaa
aagaatcctcaagcgactctcgaggagctcagccaaaccaaggaagaggcgcctcttccg
tgcgtgaaactggtgtacgaggacggcttcgactaccagcgaacattcgcgcctctcgtg
caagctgaagcggatttcgacaagcaaataaaggacggccagaagctcgtgagagtcaaa
ctgcggtgggaacaaggcctgaaccggcggcgccttgcgtacttcatgtactcccgagac
gaagggtgcaacgttcgcgtggcagctggggacgaagtgaaaatatcgacggtgctgccc
aagtctgttttgtccggtgcctcttcctcggcccctgcaagcagcggggggtctcacggg
tcggggtgtacgtacagcaacgaggcgacgagctcgaacggcgtggggagcggcggaacc
gcgggacttgaaggagatgggaattttgtgcagtggagttgcactggcagcataacgcgc
ttctctgaagacagcgaagaagtcattgtggaagtcaagaagccgccaaatgctaaggga
gcctgggacagcccggtgccgcttctctacaccatcgaattcgtctggaaaagcacttcg
tttgagcgcatgcaggcggctctgcgccagctcgcagtggatgaaatcagcgtgagcagt
tacctgtaccacacgctgatggggaagcagatggagcaccagatcatccagactccgatg
ccgttgcagatctcagctcccaacctcgctccgttgaatccgagtcaaatgctggccatt
cgctacgccctgcagcacccgctctcgctcattcaaggaccgccggggacggggaaaacg
ttgacttgcagcacactcgtctaccagatggtgaagctgagtgaggttggttctcacatc
cacccccgctgtgcaggccgcgtcaacaaggagggcggccaggtgctcgttgtcgctccc
agtaacgtagccgtggaccagctggccgaaagaatcaatcgcacaggtctcaaagtcatt
cgcatgtactcaaagtcgcgcgaaggcgcttcctcttccctcacttctttctgcgtggaa
aacctggcgctccacaaaaaggttctcgagctcaagaccgggagcagcgacgagatggcc
aaatacatccaactcaaagagcagaccggcgagctcgcagctgcggatgagcggcggctg
cggctgttgatttctcgggcagaaatggagattctccaaactgccgatgtcatttgtaca
acttgcgtaggcgcgggggacaatcgcctgcagggttttcgcttccgccaggtcgtcatc
gacgaggccgcgcaagcgacggagcctgagtgtctgatcccgatcgtcctgggggccaaa
caagtggtgttgataggggaccactgccagctggggcccgttgtgttgagcaagaaggcc
gcggctgcgggcttggcgacgtctctcttttcgcggctcctggccctcggccaccggcct
cttcgactcaaggttcagtatcgcatgcatcccgctctgtcgttcttcccatcctatttc
ttctacgagggtgagcttcagaacggcgtcaccatgacggaacgcacctactttcaccag
gggcctggcgaccaccggttcccctggccaaacgaggagcgaccgatgtttttctaccac
tcgactgcgtcggaagaaattagcggatcggggacatcgtacgtgaaccgggtcgaggcg
agcaacatcgaaaagatcgtcacgttcctcctcaaatgcggtttgaaagcctctcagatc
ggcgtcatcacgccgtacgacggacagcgggctcacatttcgtcactctttcagcgccag
acaacccttgggcaagcggcgttcgccgacctcgaagtcgcatccgtcgacgcattccag
ggtcgagaaaaagacttcattctcctgtcgtgcgtccggtccaacagcaacacggggatt
ggctttttggcggactcgcggcggttgaatgtggctatgacacgagcaaagtacggactc
atcatttgtggcaatgccactgtcctcgcaaactacatgccccgggttgcccggccgcca
ggggctccggcagctccgcccccagggagtggcaccacgggactgcccgggaacgctctc
ggcccctgtggagtgcaggtaggtccgggggcttccacgctttcgggcacgccgtgtgta
ccggagcctcccatctggcgtttgttgattcaccactacctcaagtacgacttggttgtt
gatgggcctttgagcaatctgaagccgtcgaaaatccgcattacccttccgcccctgacc
cctttcggggcgctcacggcggcgggcgcctcgaagggcggaagaggaggtgccggcgct
acaaaggggaaactcggcaagatcaaggcagcttcgagacacattgcgccggaggagctc
caagactacgaccggcacgcgacaacttctggatatctgcaaactgttccctcttctggc
ggcctcagcgctggacagcccaacgcagggccgcctcctgcttcgacctacattccaaat
ggcgccggcggctactattctgcgccacctctgtacccatgtgcggctttcgctgcgctt
ttgggtgcagatcggggcttccagtctcagtcccccatgccgtcgtcgtctttgatggct
gctcacgccgcctcaggcacggcgttctactacccttcgggccaaggcggcgcgctggct
gcagccgcggtttcgggcgcagatcatcagacactgcgggctccagcggcttacttctcc
ggacgtgatgcggaggcggggggtttctctggaggcagtcaaggcgcaagcgccgcttgc
gctagttcgagtttcagagattcaggagccgggctcggccagtcaggggcgggagcttcc
aaaagcaacacccggccaggtgaagggccgcatggtgcggtcgacgtgatttcacgtgcc
atcgccggcggaggagcctttgcttcgcgaccatttcccacggagacagctgacgcagga
acggcgactcccggtgccgggaagcgcggcggtccaaagtcctcagacagagacgcccga
aatgagacgagagggttgggagagagtttaggtccagcgaacgcatctggagcttcggac
ccagactttgtaggccgcgactccggctgcgcatcgagacctaaccgagccgcgacagtc
gtgtcggaacagcttgatgacgattctttcacatttatagggagtcaagttggattttaa
DBGET
integrated database retrieval system
