Toxoplasma gondii: TGME49_297140
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Entry
TGME49_297140 CDS
T01093
Name
(RefSeq) U6 snRNA-associated sm family protein Lsm2, putative
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
tgo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TGME49_297140
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_297140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_297140
03041 Spliceosome [BR:
tgo03041
]
TGME49_297140
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TGME49_297140
mRNA degradation factors
5'-3' decay
Lsm complex
TGME49_297140
Spliceosome [BR:
tgo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TGME49_297140
Complex C
U2 snRNP components
TGME49_297140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
7898979
NCBI-ProteinID:
XP_018638345
UniProt:
S8GU68
LinkDB
All DBs
Position
II:join(1565097..1565099,1565176..1565196,1565788..1565952,1566469..1566606)
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AA seq
108 aa
AA seq
DB search
MSRHRVPSMFFSFFQTLVERQTQIMVELKNDLQITGSLHSVDQFLNIKLNNVSVADPERC
PHLLSVKNCFIRGSAVRYVHLPPSAVDVSQLQDMCRRESAGSNDRDRK
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgtccagacaccgagtcccctcgatgttcttttccttcttccagacgctcgtggagcgt
caaacgcaaatcatggtggagctcaaaaatgatctgcaaatcactggctctctccactcc
gtcgaccagtttctgaacatcaagttgaacaacgtctcagtggccgatccggaaaggtgc
ccccatttgctgtcggtcaaaaactgctttatccgaggctctgcggttcgctacgtccac
ttacctccctctgccgtcgacgtttcgcaactgcaagacatgtgccgccgagagagtgca
gggagcaacgaccgcgacagaaagtag
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