Toxoplasma gondii: TGME49_300340
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Entry
TGME49_300340 CDS
T01093
Name
(RefSeq) CAF1 family ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_300340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_300340
Enzymes [BR:
tgo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TGME49_300340
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TGME49_300340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
7895190
NCBI-ProteinID:
XP_002371757
UniProt:
S8GAU2
LinkDB
All DBs
Position
XII:complement(join(65129..65270,65740..65909,66263..66337,66920..67025,67602..67682,68634..68868,69632..70288,70666..70855))
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AA seq
551 aa
AA seq
DB search
MGAETTRQAESPPGSGEDGSTHSSVDGANSGARSRCLSDADRARLLDQAVKDICDADFVA
VDLEFTGLFPHQSSAAKRPVCLKSYFERCVQAAEFFLAPQLGICAARRRRAASSSRSPAS
EESSQTSALCSSKAAARQPSGSSQTATDDPREGVQRRSDAPESAGACSDEEAVKWELAPY
TFYAFPQQRKQGGVDTATLKWLLQNGLDFNEWISAGFDYIRLAELQQQARQAGAANVCRH
GASSGNGDMGLRTSNGGMNDGDRKPRVAAGRPADQPEGETEEAASTARREVPKSADSNRA
SAGGAPGGLEVTGLQRLIEAIVEKEKPLVVHNGHLDLLHVFDKFIGKVPGTLPEFCSEML
RLFTGGIYDTKHVANEGKTFVLKIGDPRTTSLVSLRHHLLRSESLCVFEIAPHRRSAFDL
TFQQLNCDSGPECGRSHEAGYDALLTAQIFVMELDLYAQHHSLHESLVGGGSSDHPDDDL
WVMEELRAAKKRRRRRKNKPKVQPVPLDWNTHRWYAPFRNRVGVSGVRPGYIDLSDPWTE
EKPTPAMPSET
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgggagcggagacgacgcggcaggctgagagcccgccaggttctggagaagatggcagc
actcacagttcagtcgatggcgccaactccggtgctcgctcacgctgtctcagcgacgcc
gacagagcgcgtctgcttgaccaagctgtgaaagacatttgcgatgctgactttgttgcc
gtcgacttggagttcacggggctgtttcctcaccagtcttcggcagcgaaacgtcctgtg
tgcctcaagtcctacttcgagcgctgcgtccaggccgcggagttcttcctcgcgccgcaa
ctcggcatttgcgcagctcgtcgtcgtcgtgctgcgtcttcctctcgctctccggcgtcc
gaagagtcttcacaaaccagtgctttgtgtagctcaaaggcggccgctcgacagccgtcc
ggctcttcgcagaccgcgacggacgacccgcgggagggcgttcaaaggcgcagcgacgcg
ccagagtccgccggcgcatgcagcgacgaagaagcggtaaaatgggagttggcgccgtac
actttctacgcctttccgcagcagcggaagcaggggggggtcgacacagcgactctgaag
tggttgcttcagaacggcttggacttcaacgagtggataagcgcaggcttcgactacatc
cgactcgcggagctgcagcaacaagcgcgccaggcaggcgcggcgaacgtatgcaggcac
ggtgcctcctcgggcaacggagacatggggctgagaacctcaaatggcgggatgaacgac
ggagacaggaagcctcgagtagctgcgggtcggccagctgaccaaccggaaggcgagaca
gaagaagctgcctcgacggcccggcgagaagttcccaaaagtgcagactcgaaccgagct
tctgccggaggcgctcccggcggcctggaagtaaccggcttgcagcgcctcatcgaagcc
atcgtggagaaggaaaaacctcttgtagtccacaacgggcacctcgacttgttgcatgtc
ttcgacaaattcattggcaaagtccccggcactctgccagagttctgcagcgaaatgttg
aggctgttcactggaggcatttatgatacgaagcacgtagcaaacgagggcaaaacgttc
gttctgaaaatcggggatccgaggacgacctccttagtctctcttcgccatcaccttctc
agaagcgaaagcttgtgcgtcttcgagatcgcaccccatcgacgaagcgcctttgatttg
actttccagcagctcaactgcgacagcgggccggagtgcggtcgatctcatgaggcgggc
tacgacgctctgctaactgctcagatattcgtgatggaactcgatctgtacgcacaacac
cactccctccatgaaagtttggttggaggcggaagttcagaccaccccgacgacgacctt
tgggttatggaggaactacgagcggcaaagaaacgccggcgaaggcggaaaaataagccg
aaagttcaacccgtgccgttagactggaacacgcaccggtggtacgctcccttccggaat
cgtgtgggagtttctggagtccggcccgggtacatcgacttgtctgacccgtggacagag
gagaaacccacgccggcgatgccttcggaaacgtga
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