KEGG   Toxoplasma gondii: TGME49_309740
Entry
TGME49_309740     CDS       T01093                                 
Name
(RefSeq) LSM domain-containing protein
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
tgo  Toxoplasma gondii
Pathway
tgo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TGME49_309740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tgo03019]
    TGME49_309740
   03041 Spliceosome [BR:tgo03041]
    TGME49_309740
   03032 DNA replication proteins [BR:tgo03032]
    TGME49_309740
Messenger RNA biogenesis [BR:tgo03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     TGME49_309740
Spliceosome [BR:tgo03041]
 Complex A
  U1 snRNP components
   Sm proteins
    TGME49_309740
  U2 snRNP components
    TGME49_309740
 Complex B
  U1 snRNP components
    TGME49_309740
  U4/U6.U5 tri-snRNP components
    TGME49_309740
 Complex C
  U2 snRNP components
    TGME49_309740
DNA replication proteins [BR:tgo03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     TGME49_309740
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 7900454
NCBI-ProteinID: XP_002364221
UniProt: A0A125YS35
LinkDB
Position
XI:complement(join(784333..784524,785013..785140,785772..785847))
AA seq 131 aa
MATVGTPVKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLE
QVYIRGSQVKFIVFPDMLRHAPFFRMVDKAGKYKRALGLVGMRRAMNMRARGARVARARG
GGRGGGRGGMM
NT seq 396 nt   +upstreamnt  +downstreamnt
atggcaaccgtcggaactcctgtcaagcttctctacgaaggtctcggccacactgtgacg
gtggaaatcaagtcaggcgaggtgtatcggggagttcttgaaaatgctgaagacaacatg
aactgtttgctccagaccgtcaccgtcacacacagagatggacgcgtcgtgtccctcgag
caagtctacatccgcggcagtcaggtcaaattcatcgttttccccgacatgcttcgccac
gcacctttcttccgaatggtggacaaagcaggaaagtacaagagagccctgggtctcgtg
ggcatgcgtcgtgcaatgaacatgagagcacgtggtgcgcgtgttgcccgcgcgaggggt
ggcggccgaggtggtgggcggggcgggatgatgtaa

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