KEGG   Toxoplasma gondii: TGME49_315920
Entry
TGME49_315920     CDS       T01093                                 
Symbol
POLR2J, RPB11a
Name
(RefSeq) DNA-directed RNA polymerase II RPB11A
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
tgo  Toxoplasma gondii
Pathway
tgo03020  RNA polymerase
tgo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tgo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TGME49_315920 (POLR2J)
  09124 Replication and repair
   03420 Nucleotide excision repair
    TGME49_315920 (POLR2J)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tgo03021]
    TGME49_315920 (POLR2J)
   03400 DNA repair and recombination proteins [BR:tgo03400]
    TGME49_315920 (POLR2J)
Transcription machinery [BR:tgo03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     TGME49_315920 (POLR2J)
DNA repair and recombination proteins [BR:tgo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TGME49_315920 (POLR2J)
SSDB
Motif
Pfam: RNA_pol_L_2
Other DBs
NCBI-GeneID: 7900508
NCBI-ProteinID: XP_002364770
UniProt: A0A125YW99
LinkDB
Position
XI:complement(join(5076888..5076989,5077340..5077516,5077976..5078069,5078640..5078729,5079317..5079390))
AA seq 178 aa
MVKQSTMVNRLDAADVTELAPGVHKVEWVPDTRFPLCGTFVFHLEDYTIGYIIRNDLLND
PRVKFVGLRQPHPLEPKIELRIQTVSSNPFTLVLESLRKRKAGLSLLKARFKAAVGAAPV
VQTTDGVLFHSGDAAKSMDPMGVSMRGLLYLPGEEEARIAIIVVTISRRRTADLDSFL
NT seq 537 nt   +upstreamnt  +downstreamnt
atggtgaaacagtcgactatggtgaaccgcctcgatgcggcggatgtcaccgagctcgcc
cctggagtccacaaagtcgagtgggttcccgatactcggtttcctctctgcgggacgttc
gtcttccatctggaggactacacaattggctacatcatccgcaatgatctcctcaacgac
cctcgagtgaaattcgtcggcttgcgacaaccccatcctctggagccaaagattgaactt
cgtattcagacagtctcgagcaatcctttcacgctcgtcctcgagagcttgagaaagcgg
aaggcaggcctttcgttgctgaaggcgcgattcaaagcagcagtcggcgctgctccagtt
gtacagacaaccgatggcgtccttttccactccggtgatgcagcgaagagtatggacccc
atgggagtgtccatgcgtggtctgctctatttgccgggggaggaggaagcaagaattgcc
attatcgttgtcacaattagtcggaggagaactgcagatttggacagcttcttgtga

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