Toxoplasma gondii: TGME49_319650
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Entry
TGME49_319650 CDS
T01093
Name
(RefSeq) 3' exoribonuclease family, domain 1 domain-containing protein
KO
K12587
exosome complex component MTR3
Organism
tgo
Toxoplasma gondii
Pathway
tgo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TGME49_319650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgo03019
]
TGME49_319650
Messenger RNA biogenesis [BR:
tgo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TGME49_319650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
7901262
NCBI-ProteinID:
XP_002369842
UniProt:
A0A125YRQ6
LinkDB
All DBs
Position
IV:complement(join(807113..807259,807874..807996,808424..808492,809252..809340,810501..810621,811145..811250,811654..811732,812505..812682))
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AA seq
303 aa
AA seq
DB search
MCLSGRSLSALTNASLLQGSSSSLPVLPYESPNSRERLTEAANKRERHDGRRFEEMRAMC
MQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGSINLEFRFAPFATTGKDAC
SERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLISAALTCIGLALADAGI
EMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERRAFADKNCTFVDLGYCPALASVCF
IHASGTLLATESGEQMLRLCEAACYAVADEVRSCLRRSFCLRQEEKRDRETPQAPVNLSP
PSS
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctctccggccgcagcttgagcgcactgacaaatgcttcactcctccaaggaagc
agctccagtcttcccgtcctcccttatgagtcgcccaactcgcgcgaacggttgacggaa
gctgcaaacaaacgcgagagacacgatggtcgcagattcgaagaaatgcgtgcgatgtgc
atgcaaacgcactccctcgcagcagccgccggatcggcctttgtttctgtcgggaagacc
aagctgaactgcgccgtatacggcccccgtccgaacatgaaacatgcgtcgcaggatcgc
ggcagcatcaacctcgaattcagatttgccccctttgcaacgacggggaaagacgcctgc
agtgaacgagacactgcccatttgacaactttacttcatcaagctctcaacgcagttgtc
cgcctagatctctacgcgaaatcgacgattgcggtttcggtgcttgtgctcgaagatgat
ggaggtcttatctcggcggcgctcacttgtatcggtctcgctctcgccgatgcaggcatt
gaaatgctggacgtcgtgacaggcgcctcggcgtgtgtgttctccgttggacacccagac
agcccccctcgaacctgcgtcctcctcgacccggacgccgaggagcgccgagcctttgca
gacaagaactgcacgttcgtcgacctcggctactgtccggctttagcttctgtctgcttc
attcacgcttcgggaacactcctcgcaaccgagagcggcgaacagatgttgcgtttatgc
gaggcagcatgttacgctgtggccgacgaggtgcgaagctgcttgcggcgttccttctgt
ctgcggcaagaagagaaaagagaccgggagaccccacaggcgcctgtaaacctctctcct
ccctccagctga
DBGET
integrated database retrieval system
