Thioalkalivibrio sulfidiphilus: Tgr7_0080
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Entry
Tgr7_0080 CDS
T00840
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tgr
Thioalkalivibrio sulfidiphilus
Pathway
tgr03420
Nucleotide excision repair
tgr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tgr7_0080
03430 Mismatch repair
Tgr7_0080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgr03400
]
Tgr7_0080
Enzymes [BR:
tgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tgr7_0080
DNA repair and recombination proteins [BR:
tgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Tgr7_0080
MMR (mismatch excision repair)
Other MMR factors
Tgr7_0080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL71184
UniProt:
B8GTC4
LinkDB
All DBs
Position
80980..83145
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AA seq
721 aa
AA seq
DB search
MDVTTLLDSLNPAQREAVSADPGPVLVLAGAGSGKTRVLTHRIAWLIQVEGLSPHSILAV
TFTNKAAAEMRGRIEALLGMPVRGMWVGTFHGLAHRLLRAHWQDAGLPQGFQILDSDDQL
RMVKRVLKALELDEARWPPRQAQWFINARKDEGVRPQHMEDHGDPVNRQLVRIYSAYEAA
CKRAGVVDFAELLLRALELLRDTPALLEHYRARFRHILVDEFQDTNAIQYGWLRLLAGSR
IPVFAVGDDDQSIYGWRGARIEHIQHFSRDFPGTRTVRLEQNYRSTGNILRAANALIEHN
DGRLGKNLWTEDSEGAPIALYAAFNEQDEARFVAGRIEEWQREGHRHSEVAILYRSNAQS
RVFEEALIQARIPYRVYGGLRFFERAEIKDALAYLRLVASREDDAAFERVVNQPARGLGE
RTLAQIRDLARERDQSLWSASAHLLETGGLTARAGNALRGFLALVDGLAEACRDLPLHEQ
AEHVIQHSGLRDFYAAEKGEKAQARVENLDELVSAARGFSFDPETHGDMDTLTAFLAHAA
LESGEGEASAFEDCVQLMTLHSAKGLEFPLVFMAGMEEGLFPHRMSVEEPGRMEEERRLA
YVGITRARRQLVLCYAESRRLHGRETYNAPSRFLAELPAELIEDIRPRARISQPVFRRPE
QVANDAGDGLRVGVRVAHQKFGEGVITDCEGQGSNARIQVHFADHGAKWLVAGYAKLEKV
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaccaccctgctcgattccctgaaccctgcccagcgggaggccgtgagcgcc
gacccggggccggtgctggtactggccggcgccggcagcggcaagacccgcgtgctcacc
caccgcatcgcctggctgatccaggtggagggactttctccccacagtatcctcgccgtg
acctttaccaacaaggccgcggcggagatgcgcgggcgcatcgaggccctgctgggcatg
ccggtgcgcggcatgtgggtgggcaccttccacggcctggcccaccggctgctgcgggcc
cactggcaggacgcgggcctgccccagggcttccagatcctggattccgacgaccagctg
cgcatggtcaagcgggtgctcaaggcgctggagctggacgaggcccgctggccgccgcgc
caggcccagtggttcatcaacgcccgcaaggacgagggtgtgcgcccccagcacatggag
gatcacggcgatccggtgaaccgtcagctggtgcgcatctacagcgcctacgaggcggcc
tgcaagcgcgccggcgtggtggatttcgccgaactgctgctgcgcgccctggaactgctg
cgcgacacccccgccctgctggaacactaccgggcccgtttccgccacatcctggtagac
gagttccaggacaccaacgccatccagtatggctggctgcgcctgctggcgggcagccgc
atcccggtgttcgcggtgggcgatgacgaccagtccatctacggctggcgcggcgcgcgc
atcgagcacatccagcacttcagccgcgacttcccgggcacccgcaccgtgcgcctggaa
cagaactaccgttccaccggcaacatcctccgggccgccaacgcgctcatcgagcacaac
gacggccgcctgggcaagaacctgtggaccgaggacagcgagggcgcgcccatcgccctg
tacgccgccttcaacgagcaggacgaggcccgcttcgtggccgggcgcatcgaggaatgg
cagcgcgagggacaccgtcacagcgaggtggccatcctgtaccgttccaacgcccagtcc
cgggtgttcgaagaggccctgatccaggcgcgcatcccctaccgggtctacggcgggctg
cgcttcttcgaacgggccgaaatcaaggacgccctggcctacctgcgcctggtggcgagc
cgcgaggacgacgccgccttcgaacgggtggtcaaccagcccgcccgcggcctgggcgaa
cgcaccctggcgcagatccgcgacctggcccgggaacgggaccagtccctgtggagcgct
agcgcccacctgctggaaacgggcggcctgactgcccgggcgggcaacgccctgcgcggt
ttcctggccctggtggacgggctcgccgaggcctgccgggacctgcccctgcacgagcag
gcggagcacgtgatccagcattccggtctgcgtgatttctatgccgccgaaaagggcgag
aaggcccaggcacgggtggagaacctggacgagctggtgagcgcggcccggggcttcagc
ttcgacccggagacccacggcgacatggataccctcaccgccttcctggcccacgcggcg
ctcgaatccggcgagggcgaggcgtccgccttcgaggactgcgtgcagctcatgaccctg
cattccgccaagggcctggagttcccgctggtgttcatggcgggcatggaggagggcctg
ttcccccaccgcatgtccgtggaggagcccgggcgcatggaggaggaacgccggctcgcc
tacgtgggcatcacccgggcacgtcggcagctggtgctctgctacgcggaatcccgccgg
ctgcacggccgggagacctataacgccccgtcgcgcttcctggccgaactgcccgccgag
ctgatcgaggacatccgtccccgcgcgcgcatcagccagccggtgttccgccgccccgaa
caggtggccaacgacgccggtgacggcctgcgggtgggggtgcgggtggcccaccagaag
ttcggcgagggggtgatcaccgactgcgagggccagggcagcaacgcccgcatccaggtg
catttcgccgaccacggcgccaagtggctggtggcggggtatgccaagctggaaaaggtg
tcctga
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