Thioalkalivibrio sulfidiphilus: Tgr7_0356
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Entry
Tgr7_0356 CDS
T00840
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
tgr
Thioalkalivibrio sulfidiphilus
Pathway
tgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tgr7_0356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgr03019
]
Tgr7_0356
Enzymes [BR:
tgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tgr7_0356
Messenger RNA biogenesis [BR:
tgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tgr7_0356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Hydrolase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACL71454
UniProt:
B8GUU3
LinkDB
All DBs
Position
complement(398867..400165)
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AA seq
432 aa
AA seq
DB search
MKSQDPMTDTHLSDTSFSQFDLPDSVRQGIEDAGFSRCTPIQALALPIALKGHDVAGQAQ
TGTGKTAAFLIAAFNRLLRDPAPAERKQNQIRALILAPTRELAIQIHKDAVTLGAHTGLK
LGLAYGGTDYDKQRQQLVDGVDILIGTPGRIIDYFKQKVFDMRVVQVMVLDEADRMFDLG
FIKDIRFLLRRMTPPTERQSMLFSATLSHRVMELAYEHMNNPEKVQTRDEQVTAQRVRQV
VYYPANPEKIPLLLGLMKRIGPSRSMVFVNTKHMADKLEAWLKGNDIKVAVLSGDVPQQK
RQRLLKQFENDEFQVLVATDVAARGLHIPDVSHVFNFDLPQSGEDYVHRIGRTGRAGAEG
DAVSFACEDSAFYLPEIEQYIGFKIEAGAIDPELLVKPAPPAKREIRERLGAQNRGDRGG
KRASPRRRREHT
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccaggaccccatgacggatacccacctctcggatacctccttcagccagttc
gacctccccgacagtgtcagacaaggcatcgaagacgccggattcagccgctgcaccccc
atccaggccctggccctgcccatcgccctcaagggtcacgacgtggccggccaggcccag
accggcaccggcaagaccgccgccttcctgatcgccgccttcaaccgcctgctgcgtgat
cccgcccccgccgagcgcaagcagaaccagatccgcgccctgatccttgcccccacccgc
gagctggccatccagatccacaaggacgccgtgaccctgggtgcccacaccggcctcaag
ctgggtctcgcctacggcggcaccgattacgacaagcagcgccagcagctggtggacggg
gtggacatcctgatcggcacccccgggcgcatcatcgactacttcaagcagaaggtgttc
gacatgcgcgtggtccaggtgatggtgctggacgaggcggaccgcatgttcgacctgggc
ttcatcaaggacatccgcttcctgctgcggcgcatgaccccacccacggagcgccagtcc
atgctgttctccgccaccctctcccaccgggtgatggagctggcctacgagcacatgaac
aaccccgagaaggtgcagacccgggacgagcaggtcaccgcccagcgtgtccgccaggtg
gtctactaccccgcgaacccggagaagatccccctgctgctgggactcatgaagcgcatc
ggcccgagccgctccatggtgttcgtcaataccaagcacatggccgacaagctggaggcc
tggctcaagggcaacgacatcaaggtcgcggtgctctccggcgacgtgccccagcagaag
cgccagcgcctgctcaagcagttcgaaaacgacgaatttcaggtgctggtggccactgac
gtggcggcccgcggcctgcacatccccgacgtctctcacgtgttcaatttcgatctgccc
cagtccggcgaggactacgtgcaccgcatcggccgcaccggccgcgccggcgccgagggc
gacgcggtgagcttcgcctgcgaggattccgccttctacctgccggagatcgagcaatac
ataggcttcaagatcgaggccggggccatcgacccggaactgctggtcaaaccggcgccg
cccgccaagcgcgagatccgcgagcgcctgggcgctcagaatcgcggtgaccgcggtgga
aagcgcgcctcgccccgtcggcgccgggaacacacctga
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