Thioalkalivibrio sulfidiphilus: Tgr7_1358
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Entry
Tgr7_1358 CDS
T00840
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tgr
Thioalkalivibrio sulfidiphilus
Pathway
tgr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tgr7_1358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tgr03400
]
Tgr7_1358
Enzymes [BR:
tgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tgr7_1358
DNA repair and recombination proteins [BR:
tgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tgr7_1358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
SNF2-rel_dom
Cas3-like_C_2
AAA_30
DUF7267
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACL72443
UniProt:
B8GR23
LinkDB
All DBs
Position
complement(1457279..1460752)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSVLYSPLTPPALPDKPGQHRWGRLYGAARGLAMARALAGHKGLGVVITPDTREAETLAR
ELEFFLGDDSLPVLTLPDWETLPYDLFSPHEDIISQRLETLYRLPDLSRGILVVPVNTLM
QRIAPRAWLQGRVLMLANGDRLDRDALRRNLEQAGYHCVSQVMEHGEFAVRGSLIDLFPM
GSLEPYRVDLLDDEIESIRSFDPESQRSLDSVNAVRLLPAHEFPMDEAAIKGFRQRYRTR
FEGDPQASIIYRDVSQGMAPAGIEYYLPLFFEQMDTLFDYLPGNVRLIQVGGIEDTAAEF
LAQAAQRHEQRRHDRERPILSPEEIFLTAEELKAQLTGRPGIRVERPEQLDATPGAVNFD
VGALPDLRLHIRQSDPAASLKTFLDGFDGRVLIAAESAGRREFLVDSLRPFGLPPTPVED
WQGFVSGDARLAITVAPVEDGMRMACCGLAVITEPALFGERAHQERRRKRPTRDADAVIS
NLTDLHPGAPVVHEEHGVGRYLGLQKLAVGGQETEFLALEYAGGDKLYVPVSSLHLVSRY
TGADTEHAPLHKLGGEQWAKIRRKAAEKARDVAAELLEIYARRAARQGQSFDVQATGYAA
FADSFPFEETPDQARAIEAVLEDMASPRPMDRVVCGDVGFGKTEVAMRAAFVAASSGQQV
AVLVPTTLLAQQHYQNFSDRFADWPIRIESLSRFRSAKDTKAVLEGLADGRVDIVIGTHK
LIQGDVKFKRLGLVIIDEEHRFGVRHKERLKALRAEVDMLTLTATPIPRTLNMALSGLRD
LSIIATPPMERHAIKTFISQWNDALIQEAITREIRRGGQVYFLHNAVESIERKAREIAEL
VPGADIGIAHGQMRESELEKVMLDFYHRRHNVLVCTTIVESGIDVPTANTIIIDRADKLG
LSQLHQLRGRVGRSHHRAYAYLITPHPSAMTPDAVKRLEAIESLEDLGVGFTLASHDLEI
RGAGELLGEGQSGQTQEIGFTLYNELLERAVKAMKKGEMPDLDRPMAEVTEVDLGVPALL
PDDYVPDVHTRLILYKRIASCQSEAALRELQVEMIDRFGLLPAQAKNLMAVTELRLSLEP
LGVRKLEVGPQGGRFSFQATPNLDPARLIQLIQSDPKTYKMDPEQRLRFFEPMEDLEQRI
QAVKRILNTLAIKREAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcctgtacagtcccctcacgccacccgccctgcccgacaagcccggccagcat
cgctggggccgcctctatggcgccgcccggggccttgccatggcccgtgccctggcgggg
cacaaggggctgggtgtggtgatcacaccggatacccgggaggctgagaccctggcccgg
gaactggaattcttcctgggcgacgacagcctgccggtgctcaccctgccggactgggag
accctgccctacgacctgttctccccccatgaggacatcatctcccagcgcctggagacc
ctctaccgcctgccggacctgagccggggcatcctggtggtgccggtcaacaccctgatg
cagcgcatcgcgccccgggcctggctccagggacgcgtgctgatgctcgccaacggcgac
cggctggatcgggacgccctgcgccgcaacctggaacaggcgggctaccactgcgtcagc
caggtgatggaacacggcgagttcgccgtgcgcggctcgctcatcgacctgttccccatg
ggcagcctggagccctaccgggtggacctgctggacgatgaaatcgagtccatccgcagc
ttcgaccccgaatcccagcgcagcctcgacagcgtgaacgccgtgcgcctgctgccggcc
cacgagttccccatggacgaggccgccatcaagggcttccgccagcgctaccgcacccgc
ttcgagggcgacccccaggccagcatcatctaccgggacgtgagccaggggatggcaccg
gcgggcatcgagtactacctgcccctgttcttcgaacagatggacaccctgttcgactac
ctgcccggcaacgtgcgcctgatccaggtgggtggcatcgaggacaccgccgccgagttt
ctcgcccaggcggcgcagcgccatgagcagcgtcgccacgaccgtgagcgccccatcctc
tcgcccgaggagatctttctcaccgccgaggaactcaaggcccagctcaccgggcgcccg
ggtatccgggtggaacgccccgagcagctggacgccacccccggcgcggtgaacttcgac
gtgggcgccctcccggacctgcgcctgcacatccgccagtccgatccggcggcctcactc
aagaccttcctggacggcttcgacggccgcgtgctcattgccgccgagtccgccggacgc
cgggaattcctcgtcgacagcctgcgccccttcggcctgccccccaccccggtggaggac
tggcaaggtttcgtgagcggcgacgcacgcctggccatcaccgtcgcgcccgtcgaggac
ggcatgcgcatggcctgctgcggactggcggtcatcaccgaacccgccctgttcggcgag
cgggcccaccaggagcgccggcgcaagcgtcccacccgggacgcggacgcggtcatcagc
aacctcaccgacctgcatccgggcgccccggtggtgcacgaggaacacggcgtgggccgc
tacctgggtctgcagaagctggccgtgggcggccaggagacggagttcctggccctggaa
tacgccggcggcgacaagctttacgtgccggtgtcctccctgcacctggtgagccgctac
accggcgccgacaccgaacacgcccccctgcacaagctgggcggtgagcaatgggcgaag
atccgccgcaaggccgcggagaaggcccgggacgtggccgccgaactgctggagatctac
gccagacgcgccgcccgccagggccagtccttcgacgtgcaggccaccggctacgcggcc
tttgccgacagcttccccttcgaggagaccccggaccaggcccgggccatcgaggcggtg
ctggaggacatggcctccccccgccccatggaccgggtggtgtgcggcgacgtgggtttc
ggcaagaccgaggtggccatgcgcgccgccttcgtggccgccagcagcggccagcaggtg
gcggtgctggtgcccaccaccctgctggcccagcagcattaccagaacttcagcgaccgc
ttcgccgactggcccatccgcatcgagtccctgtcgcgctttcgcagcgccaaggacacc
aaggccgtgctggagggcctggccgacgggcgcgtggacatcgtcatcggcacccacaag
ctcatccagggggacgtgaagttcaaacgcctgggcctggtcatcatcgacgaggaacac
cgcttcggcgtgcgtcacaaggagcgcctcaaggccctgcgcgccgaggtggacatgctc
acgctgaccgccacgcccattccgcgcacgctgaacatggcgctctcgggcctgcgggat
ctgtccatcatcgccacgccgcccatggagcgtcacgccatcaagaccttcatcagccag
tggaacgacgcgctgatccaggaggccatcacccgcgagatccgccgcggcgggcaggtc
tacttcctgcacaacgcggtggagagcatcgagaggaaggcccgcgagatcgccgagctg
gtgcccggcgccgacatcggcatcgcccacgggcagatgcgcgagagcgagcttgagaag
gtgatgctggacttctaccaccggcgccacaacgtgctggtgtgcaccaccatcgtggaa
agcggcatcgacgtgcccaccgccaacaccatcatcatcgaccgcgccgacaagctgggc
ctgtcccagctgcaccagctgcgcggccgggtgggccgttcccaccaccgggcctacgcc
tacctgatcacgccccacccctcggccatgaccccggatgcggtcaagcgcctggaggcc
atcgagtccctggaagacctgggcgtgggcttcaccctggcctcccacgacctggagatc
cgcggcgccggcgaactgctgggcgagggccagagcggccagacccaggagatcggcttc
accctctacaacgagctgctggagcgggcggtgaaggccatgaagaagggcgagatgccg
gacctggaccgtcccatggccgaggtcaccgaagtggacctgggcgtgccggcgctgctg
cccgacgactacgtgcccgacgtgcacacgcgcctgatcctctataagcgcatcgccagc
tgccagtccgaggccgccctgcgggaactgcaggtggagatgatcgaccgcttcggcctg
ctgcccgcccaggccaagaacctgatggcggtgaccgaactgcgcctgagcctggaaccc
ctcggtgtgcgcaagctggaggtgggtccccagggcgggcgtttcagtttccaggccacc
cccaacctggatcccgcgcggctcatccagctgatccagtcggacccgaagacgtacaag
atggacccggagcagcgcctgcgcttcttcgaacccatggaggacctggagcagcgcatc
caggcggtaaagcgtatcctgaacaccctggccatcaagcgggaggccgcctga
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integrated database retrieval system
