Thioalkalivibrio sulfidiphilus: Tgr7_1678
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Entry
Tgr7_1678 CDS
T00840
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tgr
Thioalkalivibrio sulfidiphilus
Pathway
tgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tgr7_1678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tgr03019
]
Tgr7_1678
Enzymes [BR:
tgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tgr7_1678
Messenger RNA biogenesis [BR:
tgr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tgr7_1678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
HEM4
P-loop_SecA
AAA_22
UvrD_C
Gag_p24
Cas3-like_C_2
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACL72761
UniProt:
B8GS57
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All DBs
Position
1778765..1780108
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AA seq
447 aa
AA seq
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MSSVSKFADLGLADPLLRALEETGYESPTPIQAQAIPEVLKGRDLRAAAQTGTGKTAGFT
LPILQLLSHRPALKSGPGRPRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNIN
PQIRALRGQVDIIVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRIMKL
LPARRQNLLFSATFSDEMRALADGILTNPASVEVAARNTTAERVQQQVHLVESHAKRDLL
SHLIKQNQWQQVLVFTRTKHGANRLAEKLSKDGIPAAAIHGNKSQAARTKALDQFKNGRI
PVLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGAAGAALSLVDREEMRL
LTSIERLIRRPIERIQTEGFVAPPKSANDADGNRPPRGGRPGGGRPGNGARQGAPRGGRP
GGAPAGARRQGAGGRGRGGNGARSGNR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgtttccaagtttgccgacctcgggttggccgatccccttttgcgtgccctg
gaagagaccggctatgaatcgccgactccgatccaggcccaggccatccccgaagtgctc
aagggccgcgacctgcgcgccgccgcccagaccggcaccggcaagaccgccggcttcacc
ctgcccatcctgcagctgctgtcccaccgccccgccctcaagagcgggccgggccgaccc
cgctgcctggtgctgacccccacccgtgagctggccgcccaggtgcacgagtccgtggag
acctacggcaagtacctgaccctgcgctccctggtgatgttcggcggcgtgaacatcaat
ccacagatccgcgccctgcgcggccaggtggacatcatcgtggccacccctggccgcctg
ctggatcacgcgggccagaagaccgtggacctctccggcgtggagatcctggtcctggac
gaggccgatcgcatgctggacatgggcttcatccacgacatccgccgcatcatgaaactg
ctgccggccaggcgtcagaacctgctgttctccgccaccttctccgatgagatgcgtgcc
ctggcggacggcattttgaccaacccggccagcgtggaagtggccgcgcgcaacaccacc
gccgagcgcgtgcagcagcaggtgcacctggtggaaagccacgccaagcgggatctgctc
agccacctgatcaagcagaaccagtggcagcaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggctgagaagctgtccaaggacggcatcccggcggccgccatccac
ggcaacaagagtcaggcggcccgcaccaaggccctggaccagttcaagaacggccgtatc
ccggtgctggtggccaccgacatcgccgcccgtggcctggacatcgaccagctgccccag
gtggtgaacttcgagttgcccaacgtgcccgaggactacgtgcaccgcatcggccgcacc
gggcgtgccggtgccgccggcgctgccctgtccctggtggaccgggaggagatgcgcctg
ctgaccagcatcgaacggctgatccgccgtcccatcgagcgcatccagacggaaggcttc
gtggcaccgccgaaatccgccaacgacgccgacggcaatcgcccgccccgtggtggtcgt
cccggtggtggacgcccaggcaacggtgcccgccagggcgcaccccgtggcggtcgtccc
ggtggcgcacctgctggtgcccgccgtcagggtgccggggggcggggccgtggcggcaac
ggtgcccgcagcggcaaccgctag
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